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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0005777 through 18771 annotations produced 1 hits



protein phosphatase from PCR fragment D3 (PpD3):

Annotation Number : CG8402
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0005777
Gbrowse : chr3R:5573596-5576816 (+) // 99.76 //
Probeset : 1624743_s_at
Accessions : protein= NP_524946; /// NP_731398;, nucleotide= NM_080207; /// NM_169307;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotatio
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/thre
FlyMine data for FBgn0005777.
BDGP gene expression has embryonic in situ data for PpD3: 15 pix of staining in 18 body parts.
TRiP has 1 RNAi stocks for FBgn0005777 available for purchase.
VDRC has 3 RNAi stocks for FBgn0005777 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain204 64 of 4 0.90Down
Head167 184 of 4 0.70Down
Eye134 34 of 4 0.58Down
Thoracicoabdominal ganglion233 84 of 4 1.00None
Salivary gland99 94 of 4 0.43Down
Crop239 74 of 4 1.00None
Midgut281 24 of 4 1.20Up
Tubule407 184 of 4 1.80Up
Hindgut208 14 of 4 0.90Down
Heart194 114 of 4 0.85Down
Fat body374 314 of 4 1.63Up
Ovary518 94 of 4 2.20Up
Testis143 104 of 4 0.60Down
Male accessory glands111 44 of 4 0.50Down
Virgin spermatheca445 234 of 4 1.93Up
Mated spermatheca521 224 of 4 2.26Up
Adult carcass146 114 of 4 0.60Down
Larval CNS515 794 of 4 2.24Up
Larval Salivary gland251 94 of 4 1.09None
Larval midgut267 114 of 4 1.16Up
Larval tubule366 34 of 4 1.60Up
Larval hindgut287 114 of 4 1.25Up
Larval fat body294 124 of 4 1.30Up
Larval trachea257 394 of 4 1.12None
Larval carcass287 244 of 4 1.25None
S2 cells (growing)528 104 of 4 2.30Up
Whole fly230 54 of 4

Looking for FBgn0005777. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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