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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0008635 through 18771 annotations produced 1 hits

beta-coatomer protein (betaCop):

Annotation Number : CG6223
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0008635
Gbrowse : chrX:18275579-18279228 (-) // 100.0 //
Probeset : 1626340_at
Accessions : protein= NP_523400;, nucleotide= NM_078676;
Pathway : Golgi to ER // inferred from sequence or structural similarity /// 0006890 // retrograde vesicle-mediated transport
Interpro : Golgi to ER // non-traceable author statement /// 0006911 // phagocytosis
FlyMine data for FBgn0008635.
BDGP gene expression has embryonic in situ data for betaCop: 10 pix of staining in 10 body parts.
TRiP has 2 RNAi stocks for FBgn0008635 available for purchase.
VDRC has 3 RNAi stocks for FBgn0008635 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain231 74 of 4 0.90None
Head289 54 of 4 1.10None
Eye329 64 of 4 1.28Up
Thoracicoabdominal ganglion261 104 of 4 1.00None
Salivary gland2516 1554 of 4 9.80Up
Crop279 64 of 4 1.10None
Midgut403 114 of 4 1.60Up
Tubule382 304 of 4 1.50Up
Hindgut272 54 of 4 1.10None
Heart242 44 of 4 0.94None
Fat body390 494 of 4 1.52Up
Ovary282 94 of 4 1.10None
Testis100 04 of 4 0.40Down
Male accessory glands1857 634 of 4 7.20Up
Virgin spermatheca544 184 of 4 2.12Up
Mated spermatheca648 474 of 4 2.53Up
Adult carcass319 154 of 4 1.20Up
Larval CNS388 134 of 4 1.51Up
Larval Salivary gland2760 804 of 410.76Up
Larval midgut450 114 of 4 1.75Up
Larval tubule469 64 of 4 1.80Up
Larval hindgut496 244 of 4 1.93Up
Larval fat body466 394 of 4 1.80Up
Larval trachea446 704 of 4 1.74Up
Larval carcass425 104 of 4 1.66Up
S2 cells (growing)1112 244 of 4 4.33Up
Whole fly256 164 of 4

Looking for FBgn0008635. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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