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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0008636 through 18771 annotations produced 1 hits

homeobrain (hbn):

Annotation Number : CG33152
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0008636
Gbrowse : chr2R:16842168-16848414 (-) // 100.0 //
Probeset : 1640180_at
Accessions : protein= NP_788420;, nucleotide= NM_176240;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from electr
FlyMine data for FBgn0008636.
Homophila reports that CG33152 is a close match (9e-11) to human gene HESX1;RPX (NP_003856), a gene associated with Pituitary hormone deficiency, combined, HESX1-related, 182230 (3);Septooptic dysplasia, 182230 (3).
BioGrid reports that CG33152 interacts with CG6459 CG8942 CG9025 CG9572 .
TRiP has 1 RNAi stocks for FBgn0008636 available for purchase.
VDRC has 1 RNAi stocks for FBgn0008636 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain121 14 of 4116.00Up
Head25 14 of 424.40Up
Eye7 32 of 4 7.02None
Thoracicoabdominal ganglion2 10 of 4 2.70None
Salivary gland1 00 of 4 1.17None
Crop3 10 of 4 2.90None
Midgut8 10 of 4 8.40Up
Tubule3 10 of 4 3.00Up
Hindgut5 10 of 4 5.00None
Heart0 00 of 4 0.40None
Fat body2 10 of 4 1.98None
Ovary3 10 of 4 2.90None
Testis1 00 of 4 1.40None
Male accessory glands1 00 of 4 1.60None
Virgin spermatheca1 00 of 4 1.62None
Mated spermatheca3 10 of 4 2.86None
Adult carcass5 10 of 4 5.10None
Larval CNS81 114 of 477.17Up
Larval Salivary gland5 10 of 4 5.24None
Larval midgut5 10 of 4 5.64None
Larval tubule4 20 of 4 4.10None
Larval hindgut1 00 of 4 1.79None
Larval fat body3 20 of 4 3.10None
Larval trachea1 00 of 4 1.05None
Larval carcass2 10 of 4 2.05None
S2 cells (growing)1 00 of 4 1.76None
Whole fly1 00 of 4

Looking for FBgn0008636. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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