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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0008651 through 18771 annotations produced 1 hits



ladybird (lbl):

Annotation Number : CG6570
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0008651
Gbrowse : chr3R:17235698-17259845 (-) // 100.0 //
Probeset : 1626058_at
Accessions : protein= NP_001138092; /// NP_524434;, nucleotide= NM_001144620; /// NM_079710;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007417 // central nervous system development // non-traceable
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
FlyMine data for FBgn0008651.
BioGrid reports that CG6570 interacts with CG7001 CG7809 CG8174 CG8384 .
TRiP has 1 RNAi stocks for FBgn0008651 available for purchase.
VDRC has 5 RNAi stocks for FBgn0008651 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 14 of 4 0.70None
Head38 14 of 4 2.30Up
Eye4 10 of 4 0.25Down
Thoracicoabdominal ganglion32 34 of 4 1.90Up
Salivary gland16 32 of 4 0.97None
Crop6 13 of 4 0.40Down
Midgut5 00 of 4 0.30Down
Tubule11 02 of 4 0.70Down
Hindgut17 14 of 4 1.10None
Heart26 04 of 4 1.58Up
Fat body5 23 of 4 0.35Down
Ovary2 00 of 4 0.10Down
Testis4 02 of 4 0.30Down
Male accessory glands4 20 of 4 0.30Down
Virgin spermatheca276 154 of 416.55Up
Mated spermatheca330 334 of 419.81Up
Adult carcass27 34 of 4 1.70Up
Larval CNS28 24 of 4 1.70Up
Larval Salivary gland4 10 of 4 0.25Down
Larval midgut5 01 of 4 0.31Down
Larval tubule15 14 of 4 0.90None
Larval hindgut24 24 of 4 1.44None
Larval fat body6 10 of 4 0.40Down
Larval trachea5 21 of 4 0.33Down
Larval carcass57 24 of 4 3.44Up
S2 cells (growing)7 04 of 4 0.44Down
Whole fly16 24 of 4

Looking for FBgn0008651. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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