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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010015 through 18771 annotations produced 1 hits



chr3R:26865097-26872546 (+) // 100.0 // (calcineurin):

Annotation Number : CG1455
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1632216_at
Accessions : protein= , nucleotide= NP_524600;
Pathway : 0006470 // protein dephosphorylation // inferred from sequence or structural similarity /// 0006470 // protein dephospho
Interpro : 0005955 // calcineurin complex // inferred from sequence or structural similarity /// 0005955 // calcineurin complex //
FlyMine data for full length.
BioGrid reports that CG1455 interacts with CG15855 CG4209 CG17531 CG17769 CG3708 CG3891 Dmel CG17162 CG9071 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 0.10Down
Head47 24 of 4 1.00None
Eye7 23 of 4 0.15Down
Thoracicoabdominal ganglion10 22 of 4 0.20Down
Salivary gland11 21 of 4 0.23Down
Crop272 174 of 4 5.60Up
Midgut21 34 of 4 0.40Down
Tubule70 54 of 4 1.40Up
Hindgut141 44 of 4 2.90Up
Heart67 34 of 4 1.39Up
Fat body20 74 of 4 0.41Down
Ovary3 00 of 4 0.10Down
Testis6 01 of 4 0.10Down
Male accessory glands13 42 of 4 0.30Down
Virgin spermatheca27 14 of 4 0.56Down
Mated spermatheca31 14 of 4 0.64Down
Adult carcass200 224 of 4 4.10Up
Larval CNS15 24 of 4 0.32Down
Larval Salivary gland8 22 of 4 0.17Down
Larval midgut21 21 of 4 0.43Down
Larval tubule313 264 of 4 6.40Up
Larval hindgut71 54 of 4 1.46Up
Larval fat body8 21 of 4 0.20Down
Larval trachea16 64 of 4 0.34Down
Larval carcass595 574 of 412.22Up
S2 cells (growing)8 11 of 4 0.17Down
Whole fly48 34 of 4

Looking for FBgn0010015. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime