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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010039 through 18771 annotations produced 1 hits



Glutathione S transferase D3 (GstD3):

Annotation Number : CG4381
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010039
Gbrowse : chr3R:8198785-8199535 (+) // 100.0 //
Probeset : 1635701_at
Accessions : protein= NP_788656;, nucleotide= NM_176479;
Interpro : 0004364 // glutathione transferase activity // inferred from sequence or structural similarity /// 0004364 // glutathion
FlyMine data for FBgn0010039.
VDRC has 3 RNAi stocks for FBgn0010039 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain374 ± 114 of 4 2.80Up
Head156 ± 154 of 4 1.20None
Eye377 ± 164 of 4 2.78Up
Thoracicoabdominal ganglion316 ± 74 of 4 2.30Up
Salivary gland8 ± 00 of 4 0.06Down
Crop43 ± 24 of 4 0.30Down
Midgut49 ± 44 of 4 0.40Down
Tubule14 ± 11 of 4 0.10Down
Hindgut127 ± 34 of 4 0.90None
Heart226 ± 134 of 4 1.67Up
Fat body22 ± 52 of 4 0.16Down
Ovary195 ± 104 of 4 1.40Up
Testis471 ± 234 of 4 3.50Up
Male accessory glands52 ± 84 of 4 0.40Down
Virgin spermatheca13 ± 11 of 4 0.10Down
Mated spermatheca14 ± 11 of 4 0.11Down
Adult carcass63 ± 84 of 4 0.50Down
Larval CNS268 ± 264 of 4 1.98Up
Larval Salivary gland1327 ± 1374 of 4 9.79Up
Larval midgut80 ± 54 of 4 0.59Down
Larval tubule19 ± 40 of 4 0.10Down
Larval hindgut104 ± 84 of 4 0.77Down
Larval fat body173 ± 354 of 4 1.30None
Larval trachea228 ± 354 of 4 1.69Up
Larval carcass251 ± 164 of 4 1.85Up
S2 cells (growing)771 ± 204 of 4 5.69Up
Whole fly135 ± 84 of 4

Looking for FBgn0010039. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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