FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0010040 through 18771 annotations produced 1 hits

Glutathione S transferase D4 (GstD4):

Annotation Number : CG11512
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010040
Gbrowse : chr3R:8199823-8200561 (+) // 100.0 //
Probeset : 1626253_at
Accessions : protein= NP_524913;, nucleotide= NM_080174;
Interpro : 0004364 // glutathione transferase activity // inferred from sequence or structural similarity /// 0004364 // glutathion
FlyMine data for FBgn0010040.
BDGP gene expression has embryonic in situ data for GstD4: 4 pix of staining in 1 body parts.
BioGrid reports that CG11512 interacts with CG4423 CG8660 .
VDRC has 4 RNAi stocks for FBgn0010040 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	0.80	None
Head	4 ± 1	0 of 4	1.10	None
Eye	2 ± 1	0 of 4	0.77	None
Thoracicoabdominal ganglion	5 ± 1	0 of 4	1.50	None
Salivary gland	1 ± 0	0 of 4	0.46	None
Crop	3 ± 0	0 of 4	0.90	None
Midgut	12 ± 0	3 of 4	3.60	Up
Tubule	2 ± 0	0 of 4	0.70	None
Hindgut	4 ± 1	0 of 4	1.20	None
Heart	1 ± 0	0 of 4	0.54	None
Fat body	4 ± 4	0 of 4	1.34	None
Ovary	1 ± 0	0 of 4	0.40	None
Testis	4 ± 1	0 of 4	1.20	None
Male accessory glands	4 ± 1	0 of 4	1.20	None
Virgin spermatheca	5 ± 1	0 of 4	1.49	None
Mated spermatheca	3 ± 1	0 of 4	1.09	None
Adult carcass	4 ± 2	0 of 4	1.30	None
Larval CNS	3 ± 1	2 of 4	0.90	None
Larval Salivary gland	16 ± 1	1 of 4	4.70	Up
Larval midgut	45 ± 8	4 of 4	12.66	Up
Larval tubule	9 ± 2	3 of 4	2.60	None
Larval hindgut	24 ± 3	4 of 4	6.78	Up
Larval fat body	102 ± 31	4 of 4	28.80	None
Larval trachea	3 ± 2	0 of 4	0.92	None
Larval carcass	4 ± 0	0 of 4	1.35	None
S2 cells (growing)	8 ± 1	3 of 4	2.53	Up
Whole fly	3 ± 1	1 of 4

Looking for FBgn0010040. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720