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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010051 through 18771 annotations produced 1 hits



IP3 receptor (Itp-r83A):

Annotation Number : CG1063
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010051
Gbrowse : chr3R:1342861-1364584 (+) // 100.0 //
Probeset : 1639461_a_at
Accessions : protein= NP_730941; /// NP_730942;, nucleotide= NM_169060; /// NM_169061;
Pathway : chitin-based cuticle // inferred from genetic interaction /// 0007601 // visual perception // inferred from electronic
Interpro : 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from ele
FlyMine data for FBgn0010051.
Homophila reports that CG1063 is a close match (2e-21) to human gene ARVC2;ARVD2;RYR2;VTSIP (NP_001026), a gene associated with Arrhythmogenic right ventricular dysplasia 2, 600996 (3);Ventricular tachycardia, catecholaminergic polymorphic, 1, 604772 (3).
BioGrid reports that CG1063 interacts with CG3263 CG9533 .
TRiP has 1 RNAi stocks for FBgn0010051 available for purchase.
VDRC has 3 RNAi stocks for FBgn0010051 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain106 ± 14 of 4 3.20Up
Head61 ± 44 of 4 1.90Up
Eye42 ± 54 of 4 1.29None
Thoracicoabdominal ganglion84 ± 74 of 4 2.50Up
Salivary gland120 ± 144 of 4 3.62Up
Crop108 ± 24 of 4 3.30Up
Midgut47 ± 34 of 4 1.40Up
Tubule26 ± 04 of 4 0.80Down
Hindgut72 ± 34 of 4 2.20Up
Heart76 ± 24 of 4 2.31Up
Fat body162 ± 264 of 4 4.88Up
Ovary42 ± 04 of 4 1.30Up
Testis7 ± 10 of 4 0.20Down
Male accessory glands29 ± 24 of 4 0.90None
Virgin spermatheca29 ± 24 of 4 0.90None
Mated spermatheca33 ± 04 of 4 0.99None
Adult carcass71 ± 34 of 4 2.10Up
Larval CNS36 ± 44 of 4 1.09None
Larval Salivary gland90 ± 44 of 4 2.73Up
Larval midgut38 ± 14 of 4 1.15None
Larval tubule42 ± 24 of 4 1.30Up
Larval hindgut50 ± 14 of 4 1.53Up
Larval fat body86 ± 104 of 4 2.60Up
Larval trachea78 ± 74 of 4 2.37Up
Larval carcass52 ± 14 of 4 1.58Up
S2 cells (growing)74 ± 24 of 4 2.24Up
Whole fly33 ± 24 of 4

Looking for FBgn0010051. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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