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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010078 through 18771 annotations produced 1 hits



Ribosomal protein L23 (RpL23):

Annotation Number : CG3661
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010078
Gbrowse : chr2R:18741900-18743219 (+) // 100.0 //
Probeset : 1634764_at
Accessions : protein= NP_523813;, nucleotide= NM_079089;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // non-traceable author statemen
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0010078.
BioGrid reports that CG3661 interacts with CG9286 CG7011 CG7285 CG7923 CG9929 .
VDRC has 3 RNAi stocks for FBgn0010078 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3421 ± 744 of 4 0.80None
Head4702 ± 1754 of 4 1.10None
Eye6137 ± 1584 of 4 1.50Up
Thoracicoabdominal ganglion4675 ± 954 of 4 1.10None
Salivary gland11367 ± 3514 of 4 2.77Up
Crop5828 ± 3034 of 4 1.40Up
Midgut5076 ± 944 of 4 1.20Up
Tubule5889 ± 754 of 4 1.40Up
Hindgut4967 ± 1024 of 4 1.20Up
Heart6635 ± 5514 of 4 1.62Up
Fat body5117 ± 6874 of 4 1.25None
Ovary3388 ± 534 of 4 0.80None
Testis1166 ± 354 of 4 0.30Down
Male accessory glands9297 ± 2964 of 4 2.30Up
Virgin spermatheca5200 ± 2634 of 4 1.27Up
Mated spermatheca5334 ± 2474 of 4 1.30Up
Adult carcass5850 ± 3994 of 4 1.40Up
Larval CNS2509 ± 1434 of 4 0.61Down
Larval Salivary gland7463 ± 3804 of 4 1.82Up
Larval midgut4461 ± 1234 of 4 1.09None
Larval tubule5087 ± 604 of 4 1.20Up
Larval hindgut4160 ± 794 of 4 1.01None
Larval fat body7480 ± 7884 of 4 1.80Up
Larval trachea5631 ± 3404 of 4 1.37Up
Larval carcass4430 ± 3794 of 4 1.08None
S2 cells (growing)4254 ± 804 of 4 1.04None
Whole fly4100 ± 2824 of 4

Looking for FBgn0010078. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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