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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010097 through 18771 annotations produced 1 hits



gamma tubulin (gammaTub37C):

Annotation Number : CG17566
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010097
Gbrowse : chr2L:19183956-19185709 (-) // 100.0 //
Probeset : 1639192_at
Accessions : protein= NP_476922;, nucleotide= NM_057574;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005815 // microtubule organizing center // inferred fro
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from ele
FlyMine data for FBgn0010097.
BDGP gene expression has embryonic in situ data for gammaTub37C: 4 pix of staining in 1 body parts.
Homophila reports that CG17566 is a close match (1e-56) to human gene LIS3;TUBA1A;TUBA3 (NP_006000), a gene associated with Lissencephaly 3, 611603 (3).
BioGrid reports that CG17566 interacts with CG7831 .
TRiP has 1 RNAi stocks for FBgn0010097 available for purchase.
VDRC has 3 RNAi stocks for FBgn0010097 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 11 of 4 0.00Down
Head11 02 of 4 0.10Down
Eye10 30 of 4 0.05Down
Thoracicoabdominal ganglion13 22 of 4 0.10Down
Salivary gland28 21 of 4 0.15Down
Crop12 11 of 4 0.10Down
Midgut28 32 of 4 0.20Down
Tubule8 20 of 4 0.00Down
Hindgut15 34 of 4 0.10Down
Heart4 10 of 4 0.02Down
Fat body15 21 of 4 0.08Down
Ovary410 134 of 4 2.20Up
Testis7 21 of 4 0.00Down
Male accessory glands14 40 of 4 0.10Down
Virgin spermatheca16 22 of 4 0.08Down
Mated spermatheca17 13 of 4 0.09Down
Adult carcass31 32 of 4 0.20Down
Larval CNS27 34 of 4 0.15Down
Larval Salivary gland11 01 of 4 0.06Down
Larval midgut17 20 of 4 0.09Down
Larval tubule12 32 of 4 0.10Down
Larval hindgut10 02 of 4 0.05Down
Larval fat body16 33 of 4 0.10Down
Larval trachea6 20 of 4 0.03Down
Larval carcass12 11 of 4 0.06Down
S2 cells (growing)21 24 of 4 0.11Down
Whole fly189 84 of 4

Looking for FBgn0010097. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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