FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0010113 through 18771 annotations produced 1 hits

chr3R:26103655-26187891 (+) // 100.0 // (Fusion-6):

Annotation Number : CG15532
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1629307_s_at
Accessions : protein= , nucleotide= NP_524592; /// NP_733357; /// NP_788768;
Pathway : "0002165 // instar larval or pupal development // inferred from mutant phenotype /// 0007275 // multicellular organismal
Interpro : open tracheal system // non-traceable author statement /// 0007430 // terminal branching
FlyMine data for full length.
BioGrid reports that CG15532 interacts with CG4620 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	184 ± 4	4 of 4	2.10	Up
Head	51 ± 3	4 of 4	0.60	Down
Eye	72 ± 7	4 of 4	0.81	None
Thoracicoabdominal ganglion	230 ± 10	4 of 4	2.60	Up
Salivary gland	49 ± 10	3 of 4	0.55	Down
Crop	80 ± 3	4 of 4	0.90	None
Midgut	66 ± 5	4 of 4	0.70	Down
Tubule	26 ± 3	4 of 4	0.30	Down
Hindgut	84 ± 1	4 of 4	0.90	None
Heart	57 ± 3	4 of 4	0.64	Down
Fat body	19 ± 3	4 of 4	0.22	Down
Ovary	218 ± 2	4 of 4	2.40	Up
Testis	123 ± 5	4 of 4	1.40	Up
Male accessory glands	114 ± 9	4 of 4	1.30	None
Virgin spermatheca	22 ± 1	4 of 4	0.25	Down
Mated spermatheca	26 ± 4	4 of 4	0.29	Down
Adult carcass	41 ± 1	4 of 4	0.50	Down
Larval CNS	907 ± 65	4 of 4	10.09	Up
Larval Salivary gland	48 ± 4	4 of 4	0.54	Down
Larval midgut	50 ± 1	4 of 4	0.56	Down
Larval tubule	29 ± 2	4 of 4	0.30	Down
Larval hindgut	82 ± 4	4 of 4	0.92	None
Larval fat body	38 ± 2	4 of 4	0.40	Down
Larval trachea	490 ± 45	4 of 4	5.45	Up
Larval carcass	105 ± 6	4 of 4	1.17	None
S2 cells (growing)	400 ± 19	4 of 4	4.45	Up
Whole fly	90 ± 7	4 of 4

Looking for FBgn0010113. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720