FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0010114 through 18771 annotations produced 1 hits

hikaru genki (hig):

Annotation Number : CG2040
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010114
Gbrowse : chr2R:5115287-5134752 (-) // 100.0 //
Probeset : 1636585_a_at
Accessions : protein= NP_001014514; /// NP_525110; /// NP_724772; /// NP_724773;, nucleotide= NM_001014514; /// NM_080371; /// NM_165666; /// NM_165667;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
FlyMine data for FBgn0010114.
BDGP gene expression has embryonic in situ data for hig: 17 pix of staining in 11 body parts.
Homophila reports that CG2040 is a close match (2e-11) to human gene APOH (NP_000033), a gene associated with [Apolipoprotein H deficiency] (3).
BioGrid reports that CG2040 interacts with Dmel CG34398 .
TRiP has 1 RNAi stocks for FBgn0010114 available for purchase.
VDRC has 2 RNAi stocks for FBgn0010114 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1854 ± 33	4 of 4	25.80	Up
Head	618 ± 21	4 of 4	8.60	Up
Eye	235 ± 14	4 of 4	3.27	Up
Thoracicoabdominal ganglion	2337 ± 48	4 of 4	32.50	Up
Salivary gland	7 ± 2	0 of 4	0.11	Down
Crop	3 ± 1	1 of 4	0.00	Down
Midgut	4 ± 1	3 of 4	0.10	Down
Tubule	3 ± 0	0 of 4	0.00	Down
Hindgut	3 ± 0	0 of 4	0.10	Down
Heart	3 ± 0	1 of 4	0.05	Down
Fat body	7 ± 5	3 of 4	0.11	Down
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	5 ± 1	1 of 4	0.10	Down
Male accessory glands	7 ± 1	1 of 4	0.10	Down
Virgin spermatheca	3 ± 1	0 of 4	0.04	Down
Mated spermatheca	3 ± 1	1 of 4	0.05	Down
Adult carcass	24 ± 3	4 of 4	0.30	Down
Larval CNS	160 ± 46	4 of 4	2.24	Up
Larval Salivary gland	6 ± 2	1 of 4	0.08	Down
Larval midgut	1 ± 0	0 of 4	0.02	Down
Larval tubule	5 ± 1	0 of 4	0.10	Down
Larval hindgut	3 ± 1	2 of 4	0.05	Down
Larval fat body	3 ± 0	0 of 4	0.00	Down
Larval trachea	5 ± 4	1 of 4	0.07	Down
Larval carcass	3 ± 0	0 of 4	0.05	Down
S2 cells (growing)	2 ± 0	1 of 4	0.04	Down
Whole fly	71 ± 8	4 of 4

Looking for FBgn0010114. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720