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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010217 through 18771 annotations produced 2 hits



H+-ATPase beta subunit (ATPsyn-beta):

Annotation Number : CG11154
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010217
Gbrowse : chr4:1052439-1055543 (+) // 100.0 //
Probeset : 1630984_at
Accessions : protein= NP_726631; /// NP_726632;, nucleotide= NM_166808; /// NM_166809;
Pathway : "0000275 // mitochondrial proton-transporting ATP synthase complex
Interpro : catalytic core F(1) // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from el
FlyMine data for FBgn0010217.
Homophila reports that CG11154 is a close match (6e-24) to human gene ATP6B1;VPP3 (NP_001683), a gene associated with Renal tubular acidosis with deafness, 267300 (3).
BioGrid reports that CG11154 interacts with CG12081 CG12932 CG1378 CG14853 CG15706 CG15781 CG17377 CG18290 CG4209 CG4491 CG4753 CG4835 CG5164 CG5798 CG8229 CG11719 CG18396 CG9027 .
TRiP has 2 RNAi stocks for FBgn0010217 available for purchase.
VDRC has 2 RNAi stocks for FBgn0010217 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain805 524 of 4 0.80Down
Head1103 1124 of 4 1.10None
Eye947 684 of 4 0.90None
Thoracicoabdominal ganglion1014 254 of 4 1.00None
Salivary gland1136 804 of 4 1.08None
Crop1249 444 of 4 1.20Up
Midgut820 334 of 4 0.80Down
Tubule1348 424 of 4 1.30Up
Hindgut1204 664 of 4 1.10None
Heart1652 1014 of 4 1.57Up
Fat body3448 1864 of 4 3.28Up
Ovary1111 234 of 4 1.10None
Testis134 74 of 4 0.10Down
Male accessory glands232 154 of 4 0.20Down
Virgin spermatheca2981 2874 of 4 2.84Up
Mated spermatheca2970 1614 of 4 2.83Up
Adult carcass1983 534 of 4 1.90Up
Larval CNS1276 1564 of 4 1.22None
Larval Salivary gland1118 894 of 4 1.06None
Larval midgut1269 554 of 4 1.21Up
Larval tubule889 234 of 4 0.80None
Larval hindgut2546 884 of 4 2.42Up
Larval fat body732 1004 of 4 0.70Down
Larval trachea769 1924 of 4 0.73None
Larval carcass2328 2854 of 4 2.22Up
S2 cells (growing)520 184 of 4 0.50Down
Whole fly1050 634 of 4



H+-ATPase beta subunit (ATPsyn-beta):

Annotation Number : CG11154
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010217
Gbrowse : chr4:1052439-1054299 (+) // 100.0 //
Probeset : 1633673_a_at
Accessions : protein= NP_726631; /// NP_726632;, nucleotide= NM_166808; /// NM_166809;
Pathway : "0000275 // mitochondrial proton-transporting ATP synthase complex
Interpro : catalytic core F(1) // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from el
FlyMine data for FBgn0010217.
Homophila reports that CG11154 is a close match (6e-24) to human gene ATP6B1;VPP3 (NP_001683), a gene associated with Renal tubular acidosis with deafness, 267300 (3).
BioGrid reports that CG11154 interacts with CG12081 CG12932 CG1378 CG14853 CG15706 CG15781 CG17377 CG18290 CG4209 CG4491 CG4753 CG4835 CG5164 CG5798 CG8229 CG11719 CG18396 CG9027 .
TRiP has 2 RNAi stocks for FBgn0010217 available for purchase.
VDRC has 2 RNAi stocks for FBgn0010217 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2627 384 of 4 0.90None
Head3038 1624 of 4 1.10None
Eye3086 984 of 4 1.08None
Thoracicoabdominal ganglion2863 1124 of 4 1.00None
Salivary gland4091 1364 of 4 1.44Up
Crop3086 484 of 4 1.10None
Midgut3267 354 of 4 1.10Up
Tubule1764 1284 of 4 0.60Down
Hindgut4465 1734 of 4 1.60Up
Heart4623 2814 of 4 1.62Up
Fat body4065 10114 of 4 1.43None
Ovary1757 294 of 4 0.60Down
Testis258 94 of 4 0.10Down
Male accessory glands1455 264 of 4 0.50Down
Virgin spermatheca227 214 of 4 0.08Down
Mated spermatheca236 334 of 4 0.08Down
Adult carcass5706 2484 of 4 2.00Up
Larval CNS1710 894 of 4 0.60Down
Larval Salivary gland2347 2434 of 4 0.82None
Larval midgut2805 1134 of 4 0.98None
Larval tubule3330 2664 of 4 1.20None
Larval hindgut3899 1384 of 4 1.37Up
Larval fat body1833 2614 of 4 0.60Down
Larval trachea2501 304 of 4 0.88None
Larval carcass3150 1604 of 4 1.11None
S2 cells (growing)1906 624 of 4 0.67Down
Whole fly2849 1354 of 4

Looking for FBgn0010217. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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