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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010225 through 18771 annotations produced 1 hits



gelsolin (Gel):

Annotation Number : CG1106
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010225
Gbrowse : chr3R:60867-66780 (+) // 100.0 //
Probeset : 1627060_s_at
Accessions : protein= NP_524865; /// NP_730788; /// NP_730790; /// NP_788571; /// NP_996148;, nucleotide= NM_080126; /// NM_164319; /// NM_164321; /// NM_176394; /// NM_206426;
Pathway : engulfment // inferred from mutant phenotype /// 0030041 // actin filament polymerization // inferred from sequence or
Interpro : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
FlyMine data for FBgn0010225.
BDGP gene expression has embryonic in situ data for Gel: 16 pix of staining in 4 body parts.
Homophila reports that CG1106 is a close match (2e-61) to human gene GSN (NP_937895), a gene associated with Amyloidosis, Finnish type, 105120 (3).
TRiP has 2 RNAi stocks for FBgn0010225 available for purchase.
VDRC has 2 RNAi stocks for FBgn0010225 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain794 ± 164 of 4 1.70Up
Head2187 ± 1234 of 4 4.60Up
Eye1397 ± 1324 of 4 2.92Up
Thoracicoabdominal ganglion785 ± 254 of 4 1.60Up
Salivary gland204 ± 24 of 4 0.43Down
Crop1501 ± 464 of 4 3.10Up
Midgut218 ± 124 of 4 0.50Down
Tubule1226 ± 94 of 4 2.60Up
Hindgut902 ± 144 of 4 1.90Up
Heart2679 ± 1294 of 4 5.60Up
Fat body3245 ± 4234 of 4 6.79Up
Ovary36 ± 14 of 4 0.10Down
Testis114 ± 44 of 4 0.20Down
Male accessory glands198 ± 74 of 4 0.40Down
Virgin spermatheca3569 ± 1174 of 4 7.46Up
Mated spermatheca3039 ± 754 of 4 6.36Up
Adult carcass2416 ± 1204 of 4 5.10Up
Larval CNS207 ± 314 of 4 0.43Down
Larval Salivary gland268 ± 184 of 4 0.56Down
Larval midgut169 ± 194 of 4 0.35Down
Larval tubule1594 ± 524 of 4 3.30Up
Larval hindgut1199 ± 234 of 4 2.51Up
Larval fat body6652 ± 6954 of 413.90Up
Larval trachea549 ± 1124 of 4 1.15None
Larval carcass879 ± 1754 of 4 1.84None
S2 cells (growing)2024 ± 374 of 4 4.23Up
Whole fly478 ± 384 of 4

Looking for FBgn0010225. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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