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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010226 through 18771 annotations produced 1 hits



glutathione-S-transferase (GstS1):

Annotation Number : CG8938
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010226
Gbrowse : chr2R:12980757-12984935 (-) // 100.0 //
Probeset : 1623957_s_at
Accessions : protein= NP_523767; /// NP_725653; /// NP_725654;, nucleotide= NM_079043; /// NM_166216; /// NM_166217;
Interpro : 0004364 // glutathione transferase activity // inferred from direct assay /// 0004364 // glutathione transferase activit
FlyMine data for FBgn0010226.
BDGP gene expression has embryonic in situ data for GstS1: 50 pix of staining in 16 body parts.
BioGrid reports that CG8938 interacts with CG3340 CG3978 .
TRiP has 2 RNAi stocks for FBgn0010226 available for purchase.
VDRC has 1 RNAi stocks for FBgn0010226 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain288 ± 184 of 4 0.50Down
Head472 ± 284 of 4 0.80Down
Eye646 ± 154 of 4 1.03None
Thoracicoabdominal ganglion398 ± 44 of 4 0.60Down
Salivary gland52 ± 74 of 4 0.08Down
Crop363 ± 94 of 4 0.60Down
Midgut651 ± 454 of 4 1.00None
Tubule52 ± 34 of 4 0.10Down
Hindgut220 ± 84 of 4 0.40Down
Heart762 ± 344 of 4 1.22Up
Fat body390 ± 324 of 4 0.62Down
Ovary237 ± 44 of 4 0.40Down
Testis2393 ± 614 of 4 3.80Up
Male accessory glands294 ± 244 of 4 0.50Down
Virgin spermatheca1000 ± 194 of 4 1.60Up
Mated spermatheca714 ± 434 of 4 1.14None
Adult carcass769 ± 364 of 4 1.20Up
Larval CNS1048 ± 834 of 4 1.67Up
Larval Salivary gland138 ± 104 of 4 0.22Down
Larval midgut948 ± 724 of 4 1.51Up
Larval tubule101 ± 114 of 4 0.20Down
Larval hindgut636 ± 184 of 4 1.02None
Larval fat body2974 ± 2834 of 4 4.70Up
Larval trachea627 ± 714 of 4 1.00None
Larval carcass619 ± 324 of 4 0.99None
S2 cells (growing)5 ± 04 of 4 0.01Down
Whole fly627 ± 404 of 4

Looking for FBgn0010226. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime