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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010228 through 18771 annotations produced 1 hits



HMG protein Z (HmgZ):

Annotation Number : CG17921
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010228
Gbrowse : chr2R:17585055-17591993 (-) // 100.0 //
Probeset : 1628984_s_at
Accessions : protein= NP_726106; /// NP_726107;, nucleotide= NM_166476; /// NM_166477;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003677 // DNA binding // non-traceable author stateme
FlyMine data for FBgn0010228.
TRiP has 1 RNAi stocks for FBgn0010228 available for purchase.
VDRC has 2 RNAi stocks for FBgn0010228 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1114 ± 204 of 4 2.40Up
Head886 ± 274 of 4 1.90Up
Eye1327 ± 284 of 4 2.82Up
Thoracicoabdominal ganglion1109 ± 254 of 4 2.40Up
Salivary gland1263 ± 184 of 4 2.68Up
Crop495 ± 134 of 4 1.10None
Midgut274 ± 44 of 4 0.60Down
Tubule81 ± 74 of 4 0.20Down
Hindgut389 ± 174 of 4 0.80None
Heart533 ± 184 of 4 1.13None
Fat body591 ± 794 of 4 1.26None
Ovary204 ± 64 of 4 0.40Down
Testis86 ± 74 of 4 0.20Down
Male accessory glands1333 ± 444 of 4 2.80Up
Virgin spermatheca561 ± 374 of 4 1.19None
Mated spermatheca498 ± 204 of 4 1.06None
Adult carcass806 ± 134 of 4 1.70Up
Larval CNS2241 ± 1404 of 4 4.76Up
Larval Salivary gland2084 ± 914 of 4 4.42Up
Larval midgut270 ± 234 of 4 0.57Down
Larval tubule295 ± 204 of 4 0.60Down
Larval hindgut430 ± 514 of 4 0.91None
Larval fat body285 ± 424 of 4 0.60Down
Larval trachea846 ± 444 of 4 1.80Up
Larval carcass954 ± 144 of 4 2.03Up
S2 cells (growing)938 ± 204 of 4 1.99Up
Whole fly471 ± 294 of 4

Looking for FBgn0010228. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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