FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0010240 through 18771 annotations produced 1 hits

GABA receptor beta subunit (Lcch3):

Annotation Number : CG17336
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010240
Gbrowse : chrX:15819088-15822563 (+) // 100.0 //
Probeset : 1623048_a_at
Accessions : protein= NP_727916; /// NP_996469;, nucleotide= NM_167475; /// NM_206746;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from electronic anno
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004890 // GABA-A receptor activity // inferred
FlyMine data for FBgn0010240.
BDGP gene expression has embryonic in situ data for Lcch3: 12 pix of staining in 5 body parts.
Homophila reports that CG17336 is a close match (4e-11) to human gene CHRNA3;LNCR2;PAOD2 (NP_000734), a gene associated with {Lung cancer susceptibility 2}, 612052 (3);{Peripheral arterial occlusive disease}, 612052 (3).
TRiP has 1 RNAi stocks for FBgn0010240 available for purchase.
VDRC has 4 RNAi stocks for FBgn0010240 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	748 ± 26	4 of 4	33.60	Up
Head	173 ± 8	4 of 4	7.80	Up
Eye	69 ± 4	4 of 4	3.13	Up
Thoracicoabdominal ganglion	553 ± 11	4 of 4	24.80	Up
Salivary gland	19 ± 5	0 of 4	0.85	None
Crop	6 ± 1	0 of 4	0.30	Down
Midgut	2 ± 0	0 of 4	0.10	Down
Tubule	2 ± 0	0 of 4	0.10	Down
Hindgut	3 ± 1	0 of 4	0.10	Down
Heart	4 ± 1	1 of 4	0.20	Down
Fat body	11 ± 7	2 of 4	0.51	None
Ovary	1 ± 0	0 of 4	0.10	Down
Testis	7 ± 0	0 of 4	0.30	None
Male accessory glands	5 ± 1	0 of 4	0.30	Down
Virgin spermatheca	7 ± 0	0 of 4	0.35	None
Mated spermatheca	8 ± 2	1 of 4	0.38	None
Adult carcass	5 ± 2	0 of 4	0.30	Down
Larval CNS	409 ± 5	4 of 4	18.38	Up
Larval Salivary gland	5 ± 1	0 of 4	0.24	Down
Larval midgut	3 ± 1	0 of 4	0.16	Down
Larval tubule	5 ± 0	1 of 4	0.20	Down
Larval hindgut	6 ± 0	0 of 4	0.29	Down
Larval fat body	4 ± 1	0 of 4	0.20	Down
Larval trachea	4 ± 3	1 of 4	0.21	Down
Larval carcass	5 ± 1	0 of 4	0.23	Down
S2 cells (growing)	2 ± 1	0 of 4	0.11	Down
Whole fly	22 ± 4	4 of 4

Looking for FBgn0010240. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720