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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010241 through 18771 annotations produced 1 hits



Multi drug resistance 50 (Mdr50):

Annotation Number : CG8523
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010241
Gbrowse : chr2R:10135466-10139892 (+) // 100.0 //
Probeset : 1638775_at
Accessions : protein= NP_523740;, nucleotide= NM_079016;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electr
FlyMine data for FBgn0010241.
Homophila reports that CG8523 is a close match (8e-11) to human gene ABCG5 (NP_071881), a gene associated with Sitosterolemia, 210250 (3).
TRiP has 1 RNAi stocks for FBgn0010241 available for purchase.
VDRC has 2 RNAi stocks for FBgn0010241 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head9 ± 10 of 4 0.20Down
Eye5 ± 10 of 4 0.14Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland6 ± 20 of 4 0.16Down
Crop2 ± 10 of 4 0.10Down
Midgut547 ± 504 of 413.80Up
Tubule16 ± 90 of 4 0.40Down
Hindgut213 ± 284 of 4 5.40Up
Heart12 ± 21 of 4 0.32Down
Fat body7 ± 60 of 4 0.20Down
Ovary0 ± 00 of 4 0.00Down
Testis2 ± 10 of 4 0.10Down
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca0 ± 00 of 4 0.02Down
Mated spermatheca2 ± 00 of 4 0.06Down
Adult carcass8 ± 10 of 4 0.20Down
Larval CNS0 ± 00 of 4 0.01Down
Larval Salivary gland1 ± 00 of 4 0.04Down
Larval midgut474 ± 314 of 411.98Up
Larval tubule5 ± 31 of 4 0.10Down
Larval hindgut285 ± 184 of 4 7.19Up
Larval fat body3 ± 10 of 4 0.10Down
Larval trachea0 ± 00 of 4 0.02Down
Larval carcass3 ± 00 of 4 0.08Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly39 ± 24 of 4

Looking for FBgn0010241. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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