FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0010246 through 18771 annotations produced 1 hits

myosin61F (Myo61F):

Annotation Number : CG9155
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010246
Gbrowse : chr3L:1318481-1329623 (+) // 100.0 //
Probeset : 1638278_s_at
Accessions : protein= NP_476934; /// NP_728594; /// NP_728595; /// NP_728596;, nucleotide= NM_057586; /// NM_167870; /// NM_167871; /// NM_167872;
Pathway : 0005737 // cytoplasm // non-traceable author statement /// 0005737 // cytoplasm // inferred from electronic annotation /
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from ele
FlyMine data for FBgn0010246.
BDGP gene expression has embryonic in situ data for Myo61F: 14 pix of staining in 5 body parts.
Homophila reports that CG9155 is a close match (3e-95) to human gene CELIAC4;MYO9B;MYR5 (NP_004136), a gene associated with {Celiac disease, susceptibility to, 4}, 609753 (3).
TRiP has 1 RNAi stocks for FBgn0010246 available for purchase.
VDRC has 2 RNAi stocks for FBgn0010246 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 1	0 of 4	0.00	Down
Head	57 ± 3	4 of 4	0.10	Down
Eye	20 ± 1	4 of 4	0.04	Down
Thoracicoabdominal ganglion	6 ± 1	0 of 4	0.00	Down
Salivary gland	32 ± 6	0 of 4	0.07	Down
Crop	4 ± 1	0 of 4	0.00	Down
Midgut	3676 ± 47	4 of 4	7.80	Up
Tubule	276 ± 48	4 of 4	0.60	Down
Hindgut	1214 ± 35	4 of 4	2.60	Up
Heart	108 ± 14	4 of 4	0.23	Down
Fat body	167 ± 12	4 of 4	0.35	Down
Ovary	45 ± 3	4 of 4	0.10	Down
Testis	53 ± 4	4 of 4	0.10	Down
Male accessory glands	195 ± 8	4 of 4	0.40	Down
Virgin spermatheca	142 ± 7	4 of 4	0.30	Down
Mated spermatheca	153 ± 5	4 of 4	0.32	Down
Adult carcass	72 ± 5	4 of 4	0.20	Down
Larval CNS	27 ± 6	4 of 4	0.06	Down
Larval Salivary gland	446 ± 51	4 of 4	0.94	None
Larval midgut	2891 ± 199	4 of 4	6.12	Up
Larval tubule	270 ± 23	4 of 4	0.60	Down
Larval hindgut	920 ± 84	4 of 4	1.95	Up
Larval fat body	50 ± 5	4 of 4	0.10	Down
Larval trachea	323 ± 49	4 of 4	0.68	None
Larval carcass	203 ± 6	4 of 4	0.43	Down
S2 cells (growing)	24 ± 0	4 of 4	0.05	Down
Whole fly	472 ± 57	4 of 4

Looking for FBgn0010246. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720