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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010258 through 18771 annotations produced 1 hits



Testis specific RRM protein (Rbp4):

Annotation Number : CG9654
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010258
Gbrowse : chr3R:9480274-9482116 (-) // 100.0 //
Probeset : 1637121_at
Accessions : protein= NP_476935;, nucleotide= NM_057587;
Pathway : 0005737 // cytoplasm // inferred from direct assay
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0010258.
BioGrid reports that CG9654 interacts with CG9975 CG9745 .
VDRC has 1 RNAi stocks for FBgn0010258 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.10Down
Head3 10 of 4 0.10Down
Eye4 00 of 4 0.12Down
Thoracicoabdominal ganglion2 00 of 4 0.10Down
Salivary gland38 31 of 4 1.11None
Crop14 21 of 4 0.40Down
Midgut9 20 of 4 0.30Down
Tubule11 10 of 4 0.30Down
Hindgut7 10 of 4 0.20Down
Heart6 10 of 4 0.18Down
Fat body14 40 of 4 0.40Down
Ovary1 00 of 4 0.00Down
Testis277 44 of 4 8.00Up
Male accessory glands23 50 of 4 0.70None
Virgin spermatheca11 10 of 4 0.34Down
Mated spermatheca13 10 of 4 0.37Down
Adult carcass6 20 of 4 0.20Down
Larval CNS11 40 of 4 0.34Down
Larval Salivary gland24 43 of 4 0.69None
Larval midgut6 10 of 4 0.19Down
Larval tubule40 34 of 4 1.20None
Larval hindgut6 20 of 4 0.20Down
Larval fat body103 214 of 4 3.00None
Larval trachea9 10 of 4 0.26Down
Larval carcass4 10 of 4 0.13Down
S2 cells (growing)8 10 of 4 0.23Down
Whole fly34 14 of 4

Looking for FBgn0010258. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime