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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010265 through 18771 annotations produced 1 hits



Minute(2)32A (RpS13):

Annotation Number : CG13389
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010265
Gbrowse : chr2L:8363691-8364609 (-) // 100.0 //
Probeset : 1635303_at
Accessions : protein= NP_001033885; /// NP_476938;, nucleotide= NM_001038796; /// NM_057590;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0010265.
BDGP gene expression has embryonic in situ data for RpS13: 4 pix of staining in 1 body parts.
BioGrid reports that CG13389 interacts with CG17945 CG18468 CG2174 CG2835 CG30497 CG3091 CG33484 CG32369 CG32635 CG4853 CG5962 CG6570 CG8155 CG9511 CG9593 .
TRiP has 1 RNAi stocks for FBgn0010265 available for purchase.
VDRC has 2 RNAi stocks for FBgn0010265 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2434 554 of 4 0.70Down
Head4053 1204 of 4 1.10None
Eye5162 1244 of 4 1.41Up
Thoracicoabdominal ganglion3333 884 of 4 0.90None
Salivary gland11214 2714 of 4 3.07Up
Crop5360 2034 of 4 1.50Up
Midgut4443 724 of 4 1.20Up
Tubule5059 664 of 4 1.40Up
Hindgut4377 1174 of 4 1.20Up
Heart5830 4114 of 4 1.59Up
Fat body4881 6034 of 4 1.34Up
Ovary3135 474 of 4 0.90None
Testis1335 174 of 4 0.40Down
Male accessory glands7891 2334 of 4 2.20Up
Virgin spermatheca3706 3104 of 4 1.01None
Mated spermatheca3806 1554 of 4 1.04None
Adult carcass4870 1774 of 4 1.30Up
Larval CNS2377 1814 of 4 0.65Down
Larval Salivary gland6701 3304 of 4 1.83Up
Larval midgut3500 774 of 4 0.96None
Larval tubule4273 754 of 4 1.20None
Larval hindgut3707 284 of 4 1.01None
Larval fat body6903 7194 of 4 1.90Up
Larval trachea5724 1564 of 4 1.57Up
Larval carcass4257 3414 of 4 1.16None
S2 cells (growing)3881 964 of 4 1.06None
Whole fly3656 2104 of 4

Looking for FBgn0010265. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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