Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: 16/4/2014: We have just migrated to a new server (the old one ran XP!).
Latest news: Please report unexpected behaviours to julian.dow @ glasgow. ac. uk
Latest news: Our alternative view (http://flyatlas.gla.ac.uk/flyatlas/index.html) is still available.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010280 through 18771 annotations produced 2 hits



chr3L:16106363-16113820 (+) // 99.81 // (TBP-associated factor 110):

Annotation Number : CG5444
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1640309_s_at
Accessions : protein= , nucleotide= NP_001137958; /// NP_001163453; /// NP_524102; /// NP_730109; /// NP_788511; /// NP_996101;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006352 // transcription initiation // inferred fro
Interpro : DNA-dependent // inferred from physical interaction /// 0006355 // regulation of transcription
FlyMine data for full length.
BioGrid reports that CG5444 interacts with CG3166 CG2845 CG9375 CG9375 CG9375 CG9375 CG18085 CG33261 CG17603 CG17603 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain203 34 of 4 2.50Up
Head60 54 of 4 0.70Down
Eye95 54 of 4 1.18None
Thoracicoabdominal ganglion112 144 of 4 1.40None
Salivary gland62 34 of 4 0.77Down
Crop67 54 of 4 0.80None
Midgut67 24 of 4 0.80Down
Tubule25 14 of 4 0.30Down
Hindgut76 54 of 4 0.90None
Heart93 54 of 4 1.15None
Fat body77 104 of 4 0.96None
Ovary137 44 of 4 1.70Up
Testis30 54 of 4 0.40Down
Male accessory glands118 44 of 4 1.50Up
Virgin spermatheca72 54 of 4 0.89None
Mated spermatheca64 64 of 4 0.79None
Adult carcass65 34 of 4 0.80Down
Larval CNS170 84 of 4 2.10Up
Larval Salivary gland81 54 of 4 1.00None
Larval midgut55 34 of 4 0.68Down
Larval tubule63 44 of 4 0.80Down
Larval hindgut61 24 of 4 0.75Down
Larval fat body73 44 of 4 0.90None
Larval trachea148 234 of 4 1.83Up
Larval carcass41 54 of 4 0.52Down
S2 cells (growing)240 74 of 4 2.97Up
Whole fly81 34 of 4



chr3L:16106363-16114460 (+) // 99.91 // (TBP-associated factor 110):

Annotation Number : CG5444
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1624037_s_at
Accessions : protein= , nucleotide= NP_001137958; /// NP_001163453; /// NP_524102; /// NP_730109; /// NP_788511; /// NP_996101;
Pathway : "0006350 // transcription // inferred from electronic annotation /// 0006352 // transcription initiation // inferred fro
Interpro : DNA-dependent // inferred from physical interaction /// 0006355 // regulation of transcription
FlyMine data for full length.
BioGrid reports that CG5444 interacts with CG3166 CG2845 CG9375 CG9375 CG9375 CG9375 CG18085 CG33261 CG17603 CG17603 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain641 244 of 4 3.80Up
Head244 124 of 4 1.40Up
Eye288 224 of 4 1.69Up
Thoracicoabdominal ganglion413 134 of 4 2.40Up
Salivary gland268 154 of 4 1.58Up
Crop248 124 of 4 1.50Up
Midgut155 34 of 4 0.90None
Tubule133 54 of 4 0.80Down
Hindgut184 24 of 4 1.10None
Heart172 34 of 4 1.01None
Fat body262 344 of 4 1.54Up
Ovary267 34 of 4 1.60Up
Testis24 14 of 4 0.10Down
Male accessory glands368 54 of 4 2.20Up
Virgin spermatheca236 234 of 4 1.39None
Mated spermatheca240 154 of 4 1.41Up
Adult carcass170 74 of 4 1.00None
Larval CNS672 1044 of 4 3.95Up
Larval Salivary gland462 274 of 4 2.72Up
Larval midgut173 54 of 4 1.02None
Larval tubule190 74 of 4 1.10None
Larval hindgut241 114 of 4 1.42Up
Larval fat body190 124 of 4 1.10None
Larval trachea325 74 of 4 1.91Up
Larval carcass228 74 of 4 1.34Up
S2 cells (growing)450 114 of 4 2.65Up
Whole fly170 74 of 4

Looking for FBgn0010280. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime