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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010294 through 18771 annotations produced 2 hits



new glue 2 (ng2):

Annotation Number : CG14266
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010294
Gbrowse : chrX:3134057-3134604 (-) // 100.0 //
Probeset : 1628473_at
Accessions : protein= NP_476941;, nucleotide= NM_057593;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0005198 // structural molecule activity // non-traceable author statement
FlyMine data for FBgn0010294.
BDGP gene expression has embryonic in situ data for ng2: 4 pix of staining in 1 body parts.
BioGrid reports that CG14266 interacts with CG6459 .
VDRC has 3 RNAi stocks for FBgn0010294 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 2.20None
Head0 00 of 4 0.60None
Eye3 20 of 4 2.65None
Thoracicoabdominal ganglion2 10 of 4 2.20None
Salivary gland3 10 of 4 2.81None
Crop3 20 of 4 2.80None
Midgut1 00 of 4 0.90None
Tubule4 00 of 4 3.30Up
Hindgut1 00 of 4 1.20None
Heart3 10 of 4 2.40None
Fat body11 20 of 4 8.88Up
Ovary1 10 of 4 1.30None
Testis2 00 of 4 1.80None
Male accessory glands5 20 of 4 3.90None
Virgin spermatheca7 10 of 4 5.69Up
Mated spermatheca7 20 of 4 5.56None
Adult carcass2 00 of 4 2.10None
Larval CNS2 20 of 4 2.12None
Larval Salivary gland8957 3614 of 46890.46Up
Larval midgut4 10 of 4 3.48None
Larval tubule2 10 of 4 2.20None
Larval hindgut2 00 of 4 1.60None
Larval fat body1 00 of 4 1.40None
Larval trachea27 441 of 421.21None
Larval carcass5 20 of 4 3.85None
S2 cells (growing)1 00 of 4 0.85None
Whole fly1 00 of 4



nested /// new glue 2 (ng1 /// ng2):

Annotation Number : CG10781
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002933 /// FBgn0010294
Gbrowse : chrX:3136444-3136967 (+) // 100.0 //
Probeset : 1626826_s_at
Accessions : protein= NP_476655; /// NP_476941;, nucleotide= NM_057307; /// NM_057593;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0005198 // structural molecule activity // non-traceable author statement /// 0005515 // protein binding // inferred fro
FlyMine data for FBgn0002933 /// FBgn0010294.
BioGrid reports that CG10781 interacts with CG4920 CG6459 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 1.50None
Head0 00 of 4 0.50None
Eye0 00 of 4 1.25None
Thoracicoabdominal ganglion1 00 of 4 1.70None
Salivary gland9 60 of 413.61None
Crop2 10 of 4 3.40None
Midgut0 00 of 4 1.10None
Tubule1 00 of 4 1.60Up
Hindgut0 00 of 4 0.90None
Heart0 00 of 4 0.82None
Fat body0 00 of 4 1.32None
Ovary0 00 of 4 1.00None
Testis0 00 of 4 0.80None
Male accessory glands2 10 of 4 3.80None
Virgin spermatheca0 00 of 4 1.11None
Mated spermatheca2 00 of 4 3.11None
Adult carcass1 00 of 4 2.60None
Larval CNS0 00 of 4 0.86None
Larval Salivary gland8336 4854 of 411909.14Up
Larval midgut0 00 of 4 1.00None
Larval tubule1 00 of 4 2.00None
Larval hindgut0 00 of 4 1.04None
Larval fat body1 00 of 4 1.60None
Larval trachea16 291 of 423.79None
Larval carcass0 00 of 4 1.00None
S2 cells (growing)0 00 of 4 0.89None
Whole fly0 00 of 4

Looking for FBgn0010294. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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