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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010296 through 18771 annotations produced 1 hits



new glue 4 (ng4):

Annotation Number : CG10789
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010296
Gbrowse : chrX:3137983-3138221 (-) // 100.0 //
Probeset : 1631353_at
Accessions : protein= NP_476944;, nucleotide= NM_057596;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from e
Interpro : 0005198 // structural molecule activity // non-traceable author statement
FlyMine data for FBgn0010296.
BioGrid reports that CG10789 interacts with Dmel CG34380 .
VDRC has 5 RNAi stocks for FBgn0010296 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 2.00None
Head2 00 of 4 3.60None
Eye2 01 of 4 2.93None
Thoracicoabdominal ganglion2 10 of 4 2.70None
Salivary gland5 10 of 4 7.77None
Crop2 10 of 4 2.70None
Midgut1 00 of 4 2.00None
Tubule1 00 of 4 2.30Up
Hindgut1 00 of 4 1.40None
Heart2 00 of 4 3.90None
Fat body3 20 of 4 5.20None
Ovary0 00 of 4 0.90None
Testis0 00 of 4 0.60None
Male accessory glands1 00 of 4 2.30Up
Virgin spermatheca1 00 of 4 2.20None
Mated spermatheca2 00 of 4 2.83None
Adult carcass5 10 of 4 6.80Up
Larval CNS1 00 of 4 1.37None
Larval Salivary gland28 44 of 438.23Up
Larval midgut1 00 of 4 2.20None
Larval tubule0 00 of 4 0.90None
Larval hindgut2 00 of 4 3.43None
Larval fat body1 00 of 4 1.40None
Larval trachea2 20 of 4 3.20None
Larval carcass3 10 of 4 4.03None
S2 cells (growing)0 00 of 4 0.87None
Whole fly0 00 of 4

Looking for FBgn0010296. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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