FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0010303 through 18771 annotations produced 3 hits

chrX:12973751-12984466 (-) // 99.92 // (hemipterous):

Annotation Number : CG4353
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1626465_a_at
Accessions : protein= , nucleotide= NP_511142; /// NP_727661; /// NP_727662;
Pathway : "0000165 // MAPKKK cascade // non-traceable author statement /// 0001736 // establishment of planar polarity // non-trac
Interpro : spreading of leading edge cells // inferred from mutant phenotype /// 0007561 // imaginal disc eversion // inferred fro
FlyMine data for full length.
Homophila reports that CG4353 is a close match (8e-11) to human gene HHF5;INSR (NP_000199), a gene associated with Diabetes mellitus, insulin-resistant, with acanthosis nigricans, 610549 (3);Hyperinsulinemic hypoglycemia, familial, 5, 609968 (3);Leprechaunism, 246200 (3);Rabson-Mendenhall syndrome, 262190 (3).
BioGrid reports that CG4353 interacts with CG8291 CG11579 CG11579 CG3578 CG9553 CG9553 CG9885 CG18361 CG18361 CG18361 CG2275 CG31349 CG14026 CG14026 CG4889 CG1857 CG1857 CG1857 CG1857 CG1857 CG1857 CG1857 CG1857 CG1857 CG1857 CG7873 CG2248 CG2248 CG2849 CG18492 CG18492 CG12919 CG16973 CG16973 CG7850 CG7850 CG7850 CG7850 CG7850 CG7850 CG7850 CG7850 CG7850 CG7850 CG1200 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	178 ± 2	4 of 4	3.20	Up
Head	49 ± 1	4 of 4	0.90	None
Eye	86 ± 5	4 of 4	1.53	Up
Thoracicoabdominal ganglion	134 ± 8	4 of 4	2.40	Up
Salivary gland	77 ± 11	4 of 4	1.38	None
Crop	72 ± 6	4 of 4	1.30	None
Midgut	51 ± 4	4 of 4	0.90	None
Tubule	55 ± 1	4 of 4	1.00	None
Hindgut	62 ± 3	4 of 4	1.10	None
Heart	66 ± 2	4 of 4	1.18	None
Fat body	61 ± 12	4 of 4	1.10	None
Ovary	118 ± 2	4 of 4	2.10	Up
Testis	17 ± 2	3 of 4	0.30	Down
Male accessory glands	72 ± 4	4 of 4	1.30	None
Virgin spermatheca	55 ± 1	4 of 4	0.98	None
Mated spermatheca	53 ± 5	4 of 4	0.95	None
Adult carcass	60 ± 4	4 of 4	1.10	None
Larval CNS	92 ± 5	4 of 4	1.64	Up
Larval Salivary gland	180 ± 17	4 of 4	3.20	Up
Larval midgut	117 ± 3	4 of 4	2.09	Up
Larval tubule	102 ± 4	4 of 4	1.80	Up
Larval hindgut	102 ± 3	4 of 4	1.81	Up
Larval fat body	73 ± 4	4 of 4	1.30	None
Larval trachea	89 ± 5	4 of 4	1.59	Up
Larval carcass	48 ± 3	4 of 4	0.86	None
S2 cells (growing)	157 ± 3	4 of 4	2.80	Up
Whole fly	56 ± 6	4 of 4

chrX:12973244-12976752 (-) // 99.83 // (hemipterous):

Annotation Number : CG4353
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1634949_at
Accessions : protein= , nucleotide= NP_511142; /// NP_727661; /// NP_727662;
Pathway : "0000165 // MAPKKK cascade // non-traceable author statement /// 0001736 // establishment of planar polarity // non-trac
Interpro : spreading of leading edge cells // inferred from mutant phenotype /// 0007561 // imaginal disc eversion // inferred fro
FlyMine data for full length.
Homophila reports that CG4353 is a close match (8e-11) to human gene HHF5;INSR (NP_000199), a gene associated with Diabetes mellitus, insulin-resistant, with acanthosis nigricans, 610549 (3);Hyperinsulinemic hypoglycemia, familial, 5, 609968 (3);Leprechaunism, 246200 (3);Rabson-Mendenhall syndrome, 262190 (3).
BioGrid reports that CG4353 interacts with CG8291 CG11579 CG11579 CG3578 CG9553 CG9553 CG9885 CG18361 CG18361 CG18361 CG2275 CG31349 CG14026 CG14026 CG4889 CG1857 CG1857 CG1857 CG1857 CG1857 CG1857 CG1857 CG1857 CG1857 CG1857 CG7873 CG2248 CG2248 CG2849 CG18492 CG18492 CG12919 CG16973 CG16973 CG7850 CG7850 CG7850 CG7850 CG7850 CG7850 CG7850 CG7850 CG7850 CG7850 CG1200 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	264 ± 9	4 of 4	4.40	Up
Head	96 ± 4	4 of 4	1.60	Up
Eye	117 ± 5	4 of 4	1.95	Up
Thoracicoabdominal ganglion	202 ± 5	4 of 4	3.40	Up
Salivary gland	120 ± 11	4 of 4	2.00	Up
Crop	122 ± 6	4 of 4	2.00	Up
Midgut	79 ± 6	4 of 4	1.30	None
Tubule	65 ± 1	4 of 4	1.10	Up
Hindgut	87 ± 5	4 of 4	1.50	None
Heart	63 ± 4	4 of 4	1.05	None
Fat body	108 ± 15	4 of 4	1.79	Up
Ovary	64 ± 2	4 of 4	1.10	None
Testis	10 ± 2	4 of 4	0.20	Down
Male accessory glands	48 ± 2	4 of 4	0.80	None
Virgin spermatheca	131 ± 12	4 of 4	2.18	Up
Mated spermatheca	137 ± 8	4 of 4	2.28	Up
Adult carcass	48 ± 3	4 of 4	0.80	None
Larval CNS	213 ± 31	4 of 4	3.53	Up
Larval Salivary gland	240 ± 14	4 of 4	3.98	Up
Larval midgut	176 ± 8	4 of 4	2.93	Up
Larval tubule	140 ± 8	4 of 4	2.30	Up
Larval hindgut	149 ± 3	4 of 4	2.48	Up
Larval fat body	98 ± 5	4 of 4	1.60	Up
Larval trachea	101 ± 13	4 of 4	1.68	Up
Larval carcass	103 ± 2	4 of 4	1.72	Up
S2 cells (growing)	114 ± 3	4 of 4	1.90	Up
Whole fly	60 ± 9	4 of 4

chrX:12976840-12984453 (-) // 100.0 // (hemipterous):

Annotation Number : CG4353
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1623804_a_at
Accessions : protein= , nucleotide= NP_511142; /// NP_727661; /// NP_727662;
Pathway : "0000165 // MAPKKK cascade // non-traceable author statement /// 0001736 // establishment of planar polarity // non-trac
Interpro : spreading of leading edge cells // inferred from mutant phenotype /// 0007561 // imaginal disc eversion // inferred fro
FlyMine data for full length.
Homophila reports that CG4353 is a close match (8e-11) to human gene HHF5;INSR (NP_000199), a gene associated with Diabetes mellitus, insulin-resistant, with acanthosis nigricans, 610549 (3);Hyperinsulinemic hypoglycemia, familial, 5, 609968 (3);Leprechaunism, 246200 (3);Rabson-Mendenhall syndrome, 262190 (3).
BioGrid reports that CG4353 interacts with CG8291 CG11579 CG11579 CG3578 CG9553 CG9553 CG9885 CG18361 CG18361 CG18361 CG2275 CG31349 CG14026 CG14026 CG4889 CG1857 CG1857 CG1857 CG1857 CG1857 CG1857 CG1857 CG1857 CG1857 CG1857 CG7873 CG2248 CG2248 CG2849 CG18492 CG18492 CG12919 CG16973 CG16973 CG7850 CG7850 CG7850 CG7850 CG7850 CG7850 CG7850 CG7850 CG7850 CG7850 CG1200 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	34 ± 4	4 of 4	4.10	Up
Head	7 ± 2	2 of 4	0.90	None
Eye	7 ± 2	3 of 4	0.87	None
Thoracicoabdominal ganglion	15 ± 2	4 of 4	1.90	None
Salivary gland	8 ± 3	1 of 4	0.97	None
Crop	7 ± 2	2 of 4	0.80	None
Midgut	8 ± 2	1 of 4	1.00	None
Tubule	23 ± 3	3 of 4	2.70	Up
Hindgut	12 ± 1	4 of 4	1.40	None
Heart	10 ± 0	3 of 4	1.23	None
Fat body	12 ± 2	4 of 4	1.50	None
Ovary	16 ± 1	4 of 4	1.90	Up
Testis	0 ± 0	0 of 4	0.10	Down
Male accessory glands	11 ± 1	0 of 4	1.40	None
Virgin spermatheca	16 ± 2	3 of 4	1.91	Up
Mated spermatheca	22 ± 4	4 of 4	2.58	None
Adult carcass	9 ± 0	1 of 4	1.10	None
Larval CNS	12 ± 4	4 of 4	1.46	None
Larval Salivary gland	14 ± 1	4 of 4	1.68	None
Larval midgut	7 ± 2	0 of 4	0.92	None
Larval tubule	10 ± 2	3 of 4	1.20	None
Larval hindgut	9 ± 0	2 of 4	1.10	None
Larval fat body	8 ± 1	1 of 4	1.00	None
Larval trachea	12 ± 4	3 of 4	1.51	None
Larval carcass	2 ± 0	0 of 4	0.33	None
S2 cells (growing)	15 ± 2	4 of 4	1.85	None
Whole fly	8 ± 2	3 of 4

Looking for FBgn0010303. 3 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720