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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010309 through 18771 annotations produced 1 hits



lionette (pigeon):

Annotation Number : CG10739
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010309
Gbrowse : chr2L:19186040-19189938 (+) // 100.0 //
Probeset : 1627340_at
Accessions : protein= NP_476946;, nucleotide= NM_057598;
FlyMine data for FBgn0010309.
BDGP gene expression has embryonic in situ data for lio: 4 pix of staining in 1 body parts.
BioGrid reports that CG10739 interacts with CG17521 .
VDRC has 3 RNAi stocks for FBgn0010309 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain141 ± 24 of 4 2.20Up
Head60 ± 44 of 4 0.90None
Eye76 ± 44 of 4 1.18None
Thoracicoabdominal ganglion139 ± 44 of 4 2.10Up
Salivary gland62 ± 44 of 4 0.95None
Crop34 ± 34 of 4 0.50Down
Midgut29 ± 24 of 4 0.50Down
Tubule23 ± 14 of 4 0.40Down
Hindgut29 ± 14 of 4 0.40Down
Heart13 ± 13 of 4 0.21Down
Fat body12 ± 24 of 4 0.20Down
Ovary191 ± 34 of 4 2.90Up
Testis138 ± 64 of 4 2.10Up
Male accessory glands46 ± 54 of 4 0.70None
Virgin spermatheca21 ± 14 of 4 0.32Down
Mated spermatheca22 ± 14 of 4 0.35Down
Adult carcass20 ± 44 of 4 0.30Down
Larval CNS128 ± 54 of 4 1.98Up
Larval Salivary gland89 ± 54 of 4 1.37Up
Larval midgut22 ± 14 of 4 0.34Down
Larval tubule17 ± 04 of 4 0.30Down
Larval hindgut23 ± 24 of 4 0.37Down
Larval fat body37 ± 84 of 4 0.60Down
Larval trachea25 ± 34 of 4 0.38Down
Larval carcass17 ± 04 of 4 0.26Down
S2 cells (growing)46 ± 24 of 4 0.71Down
Whole fly65 ± 64 of 4

Looking for FBgn0010309. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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