FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0010313 through 18771 annotations produced 1 hits

Centrosomal and chromosomal factor (corto):

Annotation Number : CG2530
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010313
Gbrowse : chr3R:909342-912408 (-) // 100.0 //
Probeset : 1636864_at
Accessions : protein= NP_524231;, nucleotide= NM_079507;
Pathway : 0005634 // nucleus // non-traceable author statement /// 0005634 // nucleus // inferred from electronic annotation /// 0
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription factor acti
FlyMine data for FBgn0010313.
BDGP gene expression has embryonic in situ data for corto: 49 pix of staining in 21 body parts.
BioGrid reports that CG2530 interacts with CG5501 CG32443 CG3895 CG18412 CG6502 .
TRiP has 1 RNAi stocks for FBgn0010313 available for purchase.
VDRC has 1 RNAi stocks for FBgn0010313 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	635 ± 39	4 of 4	1.70	Up
Head	541 ± 29	4 of 4	1.50	Up
Eye	479 ± 17	4 of 4	1.30	Up
Thoracicoabdominal ganglion	393 ± 15	4 of 4	1.10	None
Salivary gland	928 ± 62	4 of 4	2.51	Up
Crop	921 ± 39	4 of 4	2.50	Up
Midgut	150 ± 3	4 of 4	0.40	Down
Tubule	294 ± 54	4 of 4	0.80	None
Hindgut	612 ± 23	4 of 4	1.70	Up
Heart	284 ± 25	4 of 4	0.77	Down
Fat body	763 ± 21	4 of 4	2.07	Up
Ovary	700 ± 34	4 of 4	1.90	Up
Testis	38 ± 2	4 of 4	0.10	Down
Male accessory glands	123 ± 7	4 of 4	0.30	Down
Virgin spermatheca	560 ± 24	4 of 4	1.52	Up
Mated spermatheca	559 ± 25	4 of 4	1.52	Up
Adult carcass	253 ± 5	4 of 4	0.70	Down
Larval CNS	1060 ± 222	4 of 4	2.87	Up
Larval Salivary gland	763 ± 151	4 of 4	2.07	None
Larval midgut	269 ± 31	4 of 4	0.73	Down
Larval tubule	350 ± 33	4 of 4	0.90	None
Larval hindgut	741 ± 59	4 of 4	2.01	Up
Larval fat body	244 ± 23	4 of 4	0.70	Down
Larval trachea	523 ± 35	4 of 4	1.42	Up
Larval carcass	504 ± 32	4 of 4	1.37	Up
S2 cells (growing)	15 ± 3	4 of 4	0.04	Down
Whole fly	369 ± 18	4 of 4

Looking for FBgn0010313. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720