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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010314 through 18771 annotations produced 1 hits



chr2L:9330766-9331981 (+) // 100.0 // (Cyclin-dependent kinase subunit 30A):

Annotation Number : CG3738
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1627770_at
Accessions : protein= , nucleotide= NP_476947;
Pathway : 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006468 // protein phosphoryla
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 14 of 4 0.10Down
Head6 02 of 4 0.00Down
Eye3 00 of 4 0.01Down
Thoracicoabdominal ganglion10 23 of 4 0.00Down
Salivary gland6 30 of 4 0.02Down
Crop2 10 of 4 0.00Down
Midgut5 22 of 4 0.00Down
Tubule4 20 of 4 0.00Down
Hindgut2 00 of 4 0.00Down
Heart1 00 of 4 0.01Down
Fat body3 20 of 4 0.01Down
Ovary749 504 of 4 2.60Up
Testis148 64 of 4 0.50Down
Male accessory glands2 00 of 4 0.00Down
Virgin spermatheca4 10 of 4 0.02Down
Mated spermatheca2 10 of 4 0.01Down
Adult carcass8 42 of 4 0.00Down
Larval CNS797 614 of 4 2.78Up
Larval Salivary gland10 23 of 4 0.04Down
Larval midgut21 24 of 4 0.08Down
Larval tubule9 21 of 4 0.00Down
Larval hindgut32 24 of 4 0.11Down
Larval fat body56 114 of 4 0.20Down
Larval trachea117 114 of 4 0.41Down
Larval carcass88 64 of 4 0.31Down
S2 cells (growing)233 134 of 4 0.81Down
Whole fly287 134 of 4

Looking for FBgn0010314. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime