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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010315 through 18771 annotations produced 1 hits



chrX:15800854-15803708 (-) // 100.0 // (cyclin D):

Annotation Number : CG9096
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1627295_s_at
Accessions : protein= , nucleotide= NP_523355; /// NP_727912; /// NP_727913;
Pathway : 0007005 // mitochondrion organization // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from elect
Interpro : 0005634 // nucleus // inferred from electronic annotation
FlyMine data for full length.
Homophila reports that CG9096 is a close match (1e-28) to human gene BCL1;CCND1;PRAD1 (NP_444284), a gene associated with Centrocytic lymphoma (2);Leukemia/lymphoma, chronic B-cell, 151400 (3);Multiple myeloma, 254500 (2);Parathyroid adenomatosis 1 (2);von Hippel-Lindau disease, modification of, 193300 (3);{Colorectal cancer, susceptibility to} (3).
BioGrid reports that CG9096 interacts with CG5072 CG5072 CG5072 CG5072 CG5072 CG5072 CG5072 CG5072 CG7413 CG7413 CG7413 CG7413 CG6147 CG6975 CG31679 CG2865 CG1034 CG31811 CG8667 CG7281 CG9930 CG14619 CG13625 CG4673 CG15112 CG11486 CG4184 CG13900 CG17964 CG32169 CG1765 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 24 of 4 0.10Down
Head30 04 of 4 0.20Down
Eye22 24 of 4 0.15Down
Thoracicoabdominal ganglion21 14 of 4 0.10Down
Salivary gland75 54 of 4 0.50Down
Crop55 34 of 4 0.40Down
Midgut41 14 of 4 0.30Down
Tubule56 44 of 4 0.40Down
Hindgut42 24 of 4 0.30Down
Heart45 24 of 4 0.30Down
Fat body61 54 of 4 0.41Down
Ovary384 134 of 4 2.50Up
Testis16 14 of 4 0.10Down
Male accessory glands98 54 of 4 0.70Down
Virgin spermatheca74 64 of 4 0.49Down
Mated spermatheca78 94 of 4 0.52Down
Adult carcass50 24 of 4 0.30Down
Larval CNS101 74 of 4 0.67Down
Larval Salivary gland193 114 of 4 1.28Up
Larval midgut64 24 of 4 0.43Down
Larval tubule69 14 of 4 0.50Down
Larval hindgut84 24 of 4 0.56Down
Larval fat body51 24 of 4 0.30Down
Larval trachea117 154 of 4 0.78Down
Larval carcass83 64 of 4 0.55Down
S2 cells (growing)141 64 of 4 0.94None
Whole fly150 44 of 4

Looking for FBgn0010315. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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