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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010317 through 18771 annotations produced 1 hits



chr3L:3466413-3468101 (+) // 99.73 // (Cyclin-dependent kinase interactor 5):

Annotation Number : CG10308
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1640972_at
Accessions : protein= , nucleotide= NP_523903; /// NP_995989;
Pathway : "0007067 // mitosis // inferred from mutant phenotype /// 0045448 // mitotic cell cycle
Interpro : embryonic // inferred from mutant phenotype"
FlyMine data for full length.
BioGrid reports that CG10308 interacts with CG7518 CG4877 CG9790 CG13510 CG5825 CG15043 CG15676 CG9046 CG15006 CG17508 CG31204 CG5708 CG11182 CG2944 CG14816 CG5473 CG31000 CG7948 CG5731 CG15218 CG2865 CG12723 CG31811 CG8667 CG18273 CG9930 CG6521 CG15112 CG11486 CG4184 CG13900 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 ± 24 of 4 0.30Down
Head7 ± 00 of 4 0.10Down
Eye2 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion21 ± 34 of 4 0.20Down
Salivary gland12 ± 20 of 4 0.13Down
Crop5 ± 10 of 4 0.10Down
Midgut6 ± 10 of 4 0.10Down
Tubule5 ± 00 of 4 0.10Down
Hindgut3 ± 10 of 4 0.00Down
Heart2 ± 00 of 4 0.02Down
Fat body6 ± 41 of 4 0.07Down
Ovary247 ± 24 of 4 2.70Up
Testis12 ± 14 of 4 0.10Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca5 ± 11 of 4 0.06Down
Mated spermatheca3 ± 10 of 4 0.04Down
Adult carcass8 ± 20 of 4 0.10Down
Larval CNS3 ± 20 of 4 0.04Down
Larval Salivary gland1 ± 00 of 4 0.02Down
Larval midgut4 ± 30 of 4 0.04Down
Larval tubule3 ± 00 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.03Down
Larval fat body9 ± 01 of 4 0.10Down
Larval trachea1 ± 10 of 4 0.02Down
Larval carcass1 ± 00 of 4 0.01Down
S2 cells (growing)9 ± 13 of 4 0.10Down
Whole fly92 ± 84 of 4

Looking for FBgn0010317. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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