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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010328 through 18771 annotations produced 1 hits



without children (woc):

Annotation Number : CG5965
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010328
Gbrowse : chr3R:23082314-23089758 (-) // 100.0 //
Probeset : 1624714_at
Accessions : protein= NP_001097946; /// NP_524886;, nucleotide= NM_001104476; /// NM_080147;
Pathway : DNA-dependent // inferred from mutant phenotype /// 0006697 // ecdysone biosynthetic process // inferred from mutant ph
Interpro : telomeric region // inferred from direct assay /// 0043234 // protein complex // inferred from direct assay"
FlyMine data for FBgn0010328.
Homophila reports that CG5965 is a close match (9e-61) to human gene FIM;RAMP;SCLL;ZNF198 (NP_932072), a gene associated with Stem-cell leukemia/lymphoma syndrome (3).
BioGrid reports that CG5965 interacts with CG7558 .
TRiP has 1 RNAi stocks for FBgn0010328 available for purchase.
VDRC has 2 RNAi stocks for FBgn0010328 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain378 ± 34 of 4 1.10None
Head191 ± 64 of 4 0.60Down
Eye203 ± 74 of 4 0.61Down
Thoracicoabdominal ganglion309 ± 144 of 4 0.90None
Salivary gland528 ± 144 of 4 1.58Up
Crop235 ± 54 of 4 0.70Down
Midgut178 ± 44 of 4 0.50Down
Tubule342 ± 64 of 4 1.00None
Hindgut231 ± 84 of 4 0.70Down
Heart146 ± 44 of 4 0.44Down
Fat body203 ± 194 of 4 0.61Down
Ovary973 ± 164 of 4 2.90Up
Testis40 ± 34 of 4 0.10Down
Male accessory glands290 ± 174 of 4 0.90None
Virgin spermatheca270 ± 104 of 4 0.81Down
Mated spermatheca283 ± 154 of 4 0.85Down
Adult carcass177 ± 34 of 4 0.50Down
Larval CNS1033 ± 754 of 4 3.08Up
Larval Salivary gland746 ± 234 of 4 2.23Up
Larval midgut173 ± 104 of 4 0.52Down
Larval tubule255 ± 84 of 4 0.80Down
Larval hindgut342 ± 34 of 4 1.02None
Larval fat body164 ± 144 of 4 0.50Down
Larval trachea505 ± 314 of 4 1.51Up
Larval carcass418 ± 84 of 4 1.25Up
S2 cells (growing)512 ± 224 of 4 1.53Up
Whole fly335 ± 134 of 4

Looking for FBgn0010328. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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