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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010329 through 18771 annotations produced 1 hits



tyramine-beta-hydroxylase (Tbh):

Annotation Number : CG1543
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010329
Gbrowse : chrX:7889729-7920567 (+) // 100.0 //
Probeset : 1627317_a_at
Accessions : protein= NP_788884;, nucleotide= NM_176711;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004497 // monooxygenase activity // inferred
FlyMine data for FBgn0010329.
Homophila reports that CG1543 is a close match (5e-107) to human gene DBH (NP_000778), a gene associated with Dopamine beta-hydroxylase deficiency, 223360 (3);Parkinson disease, resistance to, 168600 (3);[Dopamine-beta-hydroxylase activity levels, plasma] (3).
TRiP has 1 RNAi stocks for FBgn0010329 available for purchase.
VDRC has 2 RNAi stocks for FBgn0010329 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain84 ± 34 of 413.40Up
Head16 ± 04 of 4 2.60Up
Eye6 ± 22 of 4 1.01None
Thoracicoabdominal ganglion111 ± 74 of 417.60Up
Salivary gland14 ± 12 of 4 2.33Up
Crop11 ± 23 of 4 1.80None
Midgut7 ± 21 of 4 1.10None
Tubule6 ± 00 of 4 1.00None
Hindgut6 ± 01 of 4 1.10None
Heart6 ± 03 of 4 0.98None
Fat body11 ± 14 of 4 1.81Up
Ovary3 ± 00 of 4 0.60None
Testis9 ± 13 of 4 1.40None
Male accessory glands4 ± 10 of 4 0.60None
Virgin spermatheca7 ± 12 of 4 1.10None
Mated spermatheca4 ± 10 of 4 0.70None
Adult carcass9 ± 11 of 4 1.50None
Larval CNS50 ± 124 of 4 7.95Up
Larval Salivary gland6 ± 12 of 4 0.95None
Larval midgut6 ± 12 of 4 1.02None
Larval tubule4 ± 11 of 4 0.70None
Larval hindgut6 ± 02 of 4 1.05None
Larval fat body8 ± 10 of 4 1.40None
Larval trachea4 ± 11 of 4 0.78None
Larval carcass12 ± 14 of 4 1.92Up
S2 cells (growing)28 ± 14 of 4 4.52Up
Whole fly6 ± 12 of 4

Looking for FBgn0010329. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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