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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010333 through 18771 annotations produced 1 hits



chr3L:1300878-1302683 (-) // 100.0 // (Rac1):

Annotation Number : CG2248
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1632279_at
Accessions : protein= , nucleotide= NP_476950;
Pathway : "0002433 // phagocytosis triggered by activation of immune response cell surface activating receptor // inferred from di
Interpro : engulfment // inferred from mutant phenotype /// 0006974 // response to DNA damage stimulus // inferred from mutant phe
FlyMine data for full length.
Homophila reports that CG2248 is a close match (3e-11) to human gene HRAS (NP_789765), a gene associated with Costello syndrome, 218040 (3);{Bladder cancer, somatic}, 109800 (3);{Thyroid carcinoma, follicular, somatic}, 188470 (3).
BioGrid reports that CG2248 interacts with CG5680 CG5680 CG9553 CG7595 CG10443 CG18361 CG2275 CG2275 CG4550 CG2845 CG2845 CG11084 CG3595 CG3595 CG14026 CG1857 CG32156 CG13521 CG15792 CG4353 CG4353 CG5837 CG5588 CG5588 CG8556 CG8556 CG8556 CG13345 CG13345 CG2595 CG8416 CG8416 CG8416 CG8416 CG8075 CG4608 CG32134 CG10379 CG16973 CG7892 CG17245 CG17245 CG9774 CG2272 CG31317 CG18214 CG18214 CG18214 CG18214 CG18214 CG18214 CG7850 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain354 ± 144 of 4 1.20Up
Head241 ± 144 of 4 0.80None
Eye107 ± 54 of 4 0.38Down
Thoracicoabdominal ganglion242 ± 34 of 4 0.80None
Salivary gland485 ± 174 of 4 1.69Up
Crop357 ± 94 of 4 1.20Up
Midgut351 ± 164 of 4 1.20Up
Tubule349 ± 84 of 4 1.20Up
Hindgut315 ± 64 of 4 1.10None
Heart244 ± 144 of 4 0.85None
Fat body379 ± 124 of 4 1.32Up
Ovary503 ± 184 of 4 1.80Up
Testis129 ± 64 of 4 0.50Down
Male accessory glands817 ± 304 of 4 2.90Up
Virgin spermatheca478 ± 384 of 4 1.67Up
Mated spermatheca446 ± 204 of 4 1.56Up
Adult carcass180 ± 54 of 4 0.60Down
Larval CNS830 ± 1194 of 4 2.90Up
Larval Salivary gland874 ± 624 of 4 3.05Up
Larval midgut764 ± 214 of 4 2.67Up
Larval tubule665 ± 144 of 4 2.30Up
Larval hindgut737 ± 164 of 4 2.57Up
Larval fat body407 ± 364 of 4 1.40Up
Larval trachea369 ± 184 of 4 1.29Up
Larval carcass455 ± 254 of 4 1.59Up
S2 cells (growing)816 ± 344 of 4 2.85Up
Whole fly286 ± 194 of 4

Looking for FBgn0010333. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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