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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010339 through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr2R:7924830-7926358 (+) // 100.0 //):

Annotation Number : CG8340
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : chr2-
Gbrowse :
Probeset : 1624318_at
Accessions : protein= , nucleotide=
FlyMine data for chr2-.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain184 54 of 4 0.50Down
Head208 44 of 4 0.50Down
Eye233 84 of 4 0.60Down
Thoracicoabdominal ganglion197 94 of 4 0.50Down
Salivary gland302 34 of 4 0.77Down
Crop299 124 of 4 0.80Down
Midgut275 94 of 4 0.70Down
Tubule274 224 of 4 0.70Down
Hindgut224 74 of 4 0.60Down
Heart220 94 of 4 0.56Down
Fat body286 414 of 4 0.73Down
Ovary663 84 of 4 1.70Up
Testis303 124 of 4 0.80Down
Male accessory glands470 194 of 4 1.20Up
Virgin spermatheca350 54 of 4 0.90None
Mated spermatheca421 194 of 4 1.08None
Adult carcass196 74 of 4 0.50Down
Larval CNS450 404 of 4 1.15None
Larval Salivary gland576 304 of 4 1.48Up
Larval midgut211 94 of 4 0.54Down
Larval tubule158 44 of 4 0.40Down
Larval hindgut284 204 of 4 0.73Down
Larval fat body242 154 of 4 0.60Down
Larval trachea575 824 of 4 1.47Up
Larval carcass393 474 of 4 1.01None
S2 cells (growing)465 104 of 4 1.19Up
Whole fly390 174 of 4

Looking for FBgn0010339. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime