FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0010340 through 18771 annotations produced 1 hits

upstream of RpII140 (140up):

Annotation Number : CG9852
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010340
Gbrowse : chr3R:9950144-9951210 (-) // 100.0 //
Probeset : 1634560_at
Accessions : protein= NP_476951;, nucleotide= NM_057603;
Pathway : 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from
Interpro : 0008565 // protein transporter activity // inferred from electronic annotation
FlyMine data for FBgn0010340.
BDGP gene expression has embryonic in situ data for 140up: 9 pix of staining in 3 body parts.
VDRC has 2 RNAi stocks for FBgn0010340 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	110 ± 4	4 of 4	1.20	None
Head	86 ± 2	4 of 4	0.90	None
Eye	109 ± 6	4 of 4	1.14	None
Thoracicoabdominal ganglion	139 ± 3	4 of 4	1.50	Up
Salivary gland	146 ± 5	4 of 4	1.53	Up
Crop	110 ± 3	4 of 4	1.20	Up
Midgut	85 ± 3	4 of 4	0.90	None
Tubule	158 ± 3	4 of 4	1.60	Up
Hindgut	153 ± 9	4 of 4	1.60	Up
Heart	103 ± 5	4 of 4	1.08	None
Fat body	116 ± 9	4 of 4	1.21	Up
Ovary	154 ± 3	4 of 4	1.60	Up
Testis	73 ± 1	4 of 4	0.80	Down
Male accessory glands	116 ± 3	4 of 4	1.20	Up
Virgin spermatheca	125 ± 4	4 of 4	1.31	Up
Mated spermatheca	135 ± 10	4 of 4	1.41	Up
Adult carcass	99 ± 5	4 of 4	1.00	None
Larval CNS	106 ± 9	4 of 4	1.11	None
Larval Salivary gland	76 ± 4	4 of 4	0.80	Down
Larval midgut	75 ± 9	4 of 4	0.78	None
Larval tubule	168 ± 1	4 of 4	1.80	Up
Larval hindgut	118 ± 7	4 of 4	1.23	Up
Larval fat body	62 ± 6	4 of 4	0.70	Down
Larval trachea	91 ± 7	4 of 4	0.96	None
Larval carcass	75 ± 6	4 of 4	0.79	Down
S2 cells (growing)	96 ± 1	4 of 4	1.00	None
Whole fly	95 ± 3	4 of 4

Looking for FBgn0010340. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720