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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010341 through 18771 annotations produced 1 hits



Cdc42-like (Cdc42):

Annotation Number : CG12530
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010341
Gbrowse : chrX:19591116-19593285 (+) // 100.0 //
Probeset : 1633543_s_at
Accessions : protein= NP_523414; /// NP_728290;, nucleotide= NM_078690; /// NM_167677;
Pathway : engulfment // inferred from mutant phenotype /// 0007010 // cytoskeleton organization // non-traceable author statement
Interpro : amnioserosa morphology change // inferred from mutant phenotype /// 0046843 // dorsal appendage formation // inferred f
FlyMine data for FBgn0010341.
BDGP gene expression has embryonic in situ data for Cdc42: 14 pix of staining in 13 body parts.
Homophila reports that CG12530 is a close match (5e-11) to human gene KRAS2;NS3;RASK2 (NP_203524), a gene associated with Bladder cancer, 109800 (3);Breast cancer, somatic, 114480 (3);Costello syndrome, 218040 (3);Leukemia, acute myelogenous (3);Lung cancer, 211980 (3);Noonan syndrome 3, 609942 (3);Pancreatic carcinoma, somatic, 260350 (3);Stomach cancer, 137215 (3).
BioGrid reports that CG12530 interacts with CG9553 CG3510 CG4550 CG14026 CG3936 CG13521 CG13345 CG16973 .
TRiP has 3 RNAi stocks for FBgn0010341 available for purchase.
VDRC has 1 RNAi stocks for FBgn0010341 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain421 94 of 4 1.10None
Head320 114 of 4 0.80Down
Eye463 64 of 4 1.16None
Thoracicoabdominal ganglion418 124 of 4 1.10None
Salivary gland664 564 of 4 1.67Up
Crop581 104 of 4 1.50Up
Midgut1147 224 of 4 2.90Up
Tubule359 234 of 4 0.90None
Hindgut648 164 of 4 1.60Up
Heart776 204 of 4 1.95Up
Fat body397 394 of 4 1.00None
Ovary518 194 of 4 1.30Up
Testis136 34 of 4 0.30Down
Male accessory glands522 144 of 4 1.30Up
Virgin spermatheca154 114 of 4 0.39Down
Mated spermatheca183 84 of 4 0.46Down
Adult carcass301 234 of 4 0.80Down
Larval CNS782 384 of 4 1.97Up
Larval Salivary gland750 104 of 4 1.89Up
Larval midgut1581 284 of 4 3.97Up
Larval tubule1514 424 of 4 3.80Up
Larval hindgut1119 514 of 4 2.81Up
Larval fat body781 614 of 4 2.00Up
Larval trachea1060 304 of 4 2.66Up
Larval carcass755 254 of 4 1.90Up
S2 cells (growing)1514 284 of 4 3.80Up
Whole fly398 234 of 4

Looking for FBgn0010341. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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