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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010342 through 18771 annotations produced 1 hits



Centrosome associated protein 60 (Map60):

Annotation Number : CG1825
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010342
Gbrowse : chr2R:5478330-5480256 (+) // 100.0 //
Probeset : 1629576_at
Accessions : protein= NP_476952;, nucleotide= NM_057604;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0005813 //
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008017 // microtubule binding // inferred from seq
FlyMine data for FBgn0010342.
BDGP gene expression has embryonic in situ data for Map60: 15 pix of staining in 9 body parts.
BioGrid reports that CG1825 interacts with CG1825 CG3018 CG9588 CG2727 CG4799 CG7399 CG6384 Dmel CG14425 .
TRiP has 1 RNAi stocks for FBgn0010342 available for purchase.
VDRC has 1 RNAi stocks for FBgn0010342 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain156 24 of 4 0.60Down
Head58 44 of 4 0.20Down
Eye61 84 of 4 0.23Down
Thoracicoabdominal ganglion107 44 of 4 0.40Down
Salivary gland53 44 of 4 0.20Down
Crop51 24 of 4 0.20Down
Midgut41 24 of 4 0.20Down
Tubule35 24 of 4 0.10Down
Hindgut37 24 of 4 0.10Down
Heart31 14 of 4 0.12Down
Fat body31 34 of 4 0.11Down
Ovary675 64 of 4 2.50Up
Testis35 14 of 4 0.10Down
Male accessory glands37 14 of 4 0.10Down
Virgin spermatheca27 24 of 4 0.10Down
Mated spermatheca31 14 of 4 0.11Down
Adult carcass34 44 of 4 0.10Down
Larval CNS682 454 of 4 2.50Up
Larval Salivary gland139 34 of 4 0.51Down
Larval midgut45 24 of 4 0.17Down
Larval tubule90 54 of 4 0.30Down
Larval hindgut74 14 of 4 0.27Down
Larval fat body87 64 of 4 0.30Down
Larval trachea219 54 of 4 0.80Down
Larval carcass139 74 of 4 0.51Down
S2 cells (growing)293 44 of 4 1.08None
Whole fly272 124 of 4

Looking for FBgn0010342. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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