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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010348 through 18771 annotations produced 1 hits



ADP-ribosylation factor 1 (Arf79F):

Annotation Number : CG8385
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010348
Gbrowse : chr3L:22861612-22864855 (-) // 100.0 //
Probeset : 1624231_s_at
Accessions : protein= NP_001097667; /// NP_001097668; /// NP_476955; /// NP_730757; /// NP_730758; /// NP_730759; /// NP_730760;, nucleotide= NM_001104197; /// NM_001104198; /// NM_057607; /// NM_168970; /// NM_168971; /// NM_168972; /// NM_168973;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electron
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0010348.
Homophila reports that CG8385 is a close match (2e-20) to human gene CMRD;SAR1B;SARA2 (NP_057187), a gene associated with Anderson disease, 607689 (3);Chylomicron retention disease, 246700 (3).
BioGrid reports that CG8385 interacts with CG8630 CG9983 .
TRiP has 1 RNAi stocks for FBgn0010348 available for purchase.
VDRC has 2 RNAi stocks for FBgn0010348 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1140 134 of 4 1.10None
Head1216 574 of 4 1.20None
Eye1254 244 of 4 1.21Up
Thoracicoabdominal ganglion1004 264 of 4 1.00None
Salivary gland2815 1024 of 4 2.73Up
Crop1430 344 of 4 1.40Up
Midgut1532 354 of 4 1.50Up
Tubule2215 1304 of 4 2.10Up
Hindgut1177 214 of 4 1.10None
Heart1723 284 of 4 1.67Up
Fat body1870 1174 of 4 1.81Up
Ovary1377 414 of 4 1.30Up
Testis448 184 of 4 0.40Down
Male accessory glands2626 1064 of 4 2.50Up
Virgin spermatheca1958 634 of 4 1.90Up
Mated spermatheca2157 524 of 4 2.09Up
Adult carcass1003 364 of 4 1.00None
Larval CNS1554 1044 of 4 1.50Up
Larval Salivary gland3894 1334 of 4 3.77Up
Larval midgut1892 664 of 4 1.83Up
Larval tubule2103 484 of 4 2.00Up
Larval hindgut1792 124 of 4 1.74Up
Larval fat body1893 1624 of 4 1.80Up
Larval trachea1617 1184 of 4 1.57Up
Larval carcass1487 384 of 4 1.44Up
S2 cells (growing)2053 594 of 4 1.99Up
Whole fly1032 614 of 4

Looking for FBgn0010348. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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