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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010350 through 18771 annotations produced 1 hits



CDP-DAG synthase (CdsA):

Annotation Number : CG7962
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010350
Gbrowse : chr3L:8121196-8124775 (+) // 100.0 //
Probeset : 1627711_at
Accessions : protein= NP_524661;, nucleotide= NM_079922;
Pathway : open tracheal system // non-traceable author statement /// 0007601 // visual perception // inferred from electronic ann
Interpro : 0005635 // nuclear envelope // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from direct a
FlyMine data for FBgn0010350.
BDGP gene expression has embryonic in situ data for CdsA: 9 pix of staining in 7 body parts.
BioGrid reports that CG7962 interacts with CG9195 .
TRiP has 1 RNAi stocks for FBgn0010350 available for purchase.
VDRC has 2 RNAi stocks for FBgn0010350 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1818 664 of 4 3.60Up
Head2090 964 of 4 4.20Up
Eye5004 1814 of 410.00Up
Thoracicoabdominal ganglion1890 144 of 4 3.80Up
Salivary gland365 234 of 4 0.73Down
Crop1314 274 of 4 2.60Up
Midgut371 114 of 4 0.70None
Tubule504 64 of 4 1.00None
Hindgut606 84 of 4 1.20None
Heart717 344 of 4 1.43Up
Fat body673 624 of 4 1.35Up
Ovary486 14 of 4 1.00None
Testis85 74 of 4 0.20Down
Male accessory glands223 84 of 4 0.40Down
Virgin spermatheca421 184 of 4 0.84None
Mated spermatheca460 94 of 4 0.92None
Adult carcass476 134 of 4 1.00None
Larval CNS727 454 of 4 1.45Up
Larval Salivary gland613 284 of 4 1.23None
Larval midgut779 464 of 4 1.56Up
Larval tubule731 194 of 4 1.50Up
Larval hindgut406 254 of 4 0.81None
Larval fat body540 414 of 4 1.10None
Larval trachea415 1574 of 4 0.83None
Larval carcass407 114 of 4 0.82None
S2 cells (growing)542 104 of 4 1.09None
Whole fly500 444 of 4

Looking for FBgn0010350. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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