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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010359 through 18771 annotations produced 2 hits



Argonaute 1 /// /// /// deltaTrypsin /// gammaTrypsin (AGO1 /// CG30025 /// CG30031 /// deltaTry /// gammaTry):

Annotation Number : CG30031
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010358 /// FBgn0010359 /// FBgn0050025 /// FBgn0050031
Gbrowse : chr2R:7242834-7243599 (+) // 100.0 // /// chr2R:7238328-7239093 (+) // 100.0 // /// chrUextra:3542904-3543418 (-) // 67.19 // /// chrUextra:25239580-25240082 (-) // 65.62 // /// chr2R:7236598-7237363 (-) // 100.0 // /// chr2R:7241118-7241867 (-) // 97.91 //
Probeset : 1624437_s_at
Accessions : protein= NP_523694; /// NP_523734; /// NP_725034; /// NP_725035; /// NP_725036; /// NP_725341; /// NP_725342;, nucleotide= NM_078970; /// NM_079010; /// NM_165823; /// NM_165824; /// NM_165825; /// NM_166020; /// NM_166021;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from s
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003743 // translation initiation factor acti
FlyMine data for FBgn0010358 /// FBgn0010359 /// FBgn0050025 /// FBgn0050031.
Homophila reports that CG30031 is a close match (8e-12) to human gene DFNB10;DFNB8;ECHOS1;TMPRSS3 (NP_115781), a gene associated with Deafness, autosomal recessive 10, congenital, 605316 (3);Deafness, autosomal recessive 8, childhood onset, 601072 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00None
Head14 71 of 4 0.00None
Eye2 00 of 4 0.00None
Thoracicoabdominal ganglion6 10 of 4 0.00None
Salivary gland14 40 of 4 0.02None
Crop2 00 of 4 0.00None
Midgut4287 1924 of 4 7.30Up
Tubule5 10 of 4 0.00Down
Hindgut1 00 of 4 0.00None
Heart1 00 of 4 0.00None
Fat body2 20 of 4 0.00None
Ovary2 00 of 4 0.00None
Testis1 00 of 4 0.00None
Male accessory glands17 31 of 4 0.00None
Virgin spermatheca6 20 of 4 0.01None
Mated spermatheca8 10 of 4 0.01None
Adult carcass6 20 of 4 0.00None
Larval CNS6 61 of 4 0.01None
Larval Salivary gland1 00 of 4 0.00None
Larval midgut4557 1314 of 4 7.78Up
Larval tubule7 20 of 4 0.00None
Larval hindgut34 103 of 4 0.06None
Larval fat body183 843 of 4 0.30None
Larval trachea331 6042 of 4 0.57None
Larval carcass23 32 of 4 0.04None
S2 cells (growing)4 10 of 4 0.01None
Whole fly585 1864 of 4



Argonaute 1 /// /// /// deltaTrypsin /// gammaTrypsin (AGO1 /// CG30025 /// CG30031 /// deltaTry /// gammaTry):

Annotation Number : CG30025
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010358 /// FBgn0010359 /// FBgn0050025 /// FBgn0050031
Gbrowse : chr2R:7242837-7243583 (+) // 97.9 // /// chr2R:7238331-7239077 (+) // 97.9 // /// chrUextra:3542888-3543418 (-) // 69.55 // /// chr2R:7241102-7241864 (-) // 100.0 // /// chr2R:7236614-7237360 (-) // 97.9 //
Probeset : 1638377_x_at
Accessions : protein= NP_523694; /// NP_523734; /// NP_725034; /// NP_725035; /// NP_725036; /// NP_725341; /// NP_725342;, nucleotide= NM_078970; /// NM_079010; /// NM_165823; /// NM_165824; /// NM_165825; /// NM_166020; /// NM_166021;
Pathway : 0005576 // extracellular region // non-traceable author statement /// 0005576 // extracellular region // inferred from s
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003743 // translation initiation factor acti
FlyMine data for FBgn0010358 /// FBgn0010359 /// FBgn0050025 /// FBgn0050031.
Homophila reports that CG30025 is a close match (7e-12) to human gene DFNB10;DFNB8;ECHOS1;TMPRSS3 (NP_115781), a gene associated with Deafness, autosomal recessive 10, congenital, 605316 (3);Deafness, autosomal recessive 8, childhood onset, 601072 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 20 of 4 0.00None
Head17 72 of 4 0.00None
Eye5 31 of 4 0.01None
Thoracicoabdominal ganglion12 10 of 4 0.00None
Salivary gland9 21 of 4 0.01None
Crop17 22 of 4 0.00None
Midgut4395 1214 of 4 5.00Up
Tubule7 10 of 4 0.00Down
Hindgut19 41 of 4 0.00None
Heart3 10 of 4 0.00None
Fat body11 30 of 4 0.01None
Ovary1 00 of 4 0.00None
Testis7 21 of 4 0.00None
Male accessory glands15 20 of 4 0.00None
Virgin spermatheca12 11 of 4 0.01None
Mated spermatheca14 32 of 4 0.02None
Adult carcass35 63 of 4 0.00None
Larval CNS5 30 of 4 0.01None
Larval Salivary gland5 20 of 4 0.01None
Larval midgut4333 2384 of 4 4.88Up
Larval tubule15 10 of 4 0.00None
Larval hindgut35 113 of 4 0.04None
Larval fat body184 913 of 4 0.20None
Larval trachea267 4832 of 4 0.30None
Larval carcass23 23 of 4 0.03None
S2 cells (growing)7 10 of 4 0.01None
Whole fly887 2944 of 4

Looking for FBgn0010359. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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