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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010380 through 18771 annotations produced 1 hits



beta-adaptin (Bap):

Annotation Number : CG12532
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010380
Gbrowse : chrX:19625035-19628620 (+) // 100.0 //
Probeset : 1638673_at
Accessions : protein= NP_523415;, nucleotide= NM_078691;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0008021 // synaptic vesicle // traceable author statement /
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic ann
FlyMine data for FBgn0010380.
Homophila reports that CG12532 is a close match (3e-65) to human gene ADTB3A;AP3B1;HPS2 (NP_003655), a gene associated with Hermansky-Pudlak syndrome 2, 608233 (3).
BioGrid reports that CG12532 interacts with CG16704 CG17360 CG31170 CG8224 CG1691 CG31775 CG6841 CG9739 Dmel CG4460 .
TRiP has 2 RNAi stocks for FBgn0010380 available for purchase.
VDRC has 2 RNAi stocks for FBgn0010380 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain923 164 of 4 2.10Up
Head555 234 of 4 1.20Up
Eye518 284 of 4 1.16None
Thoracicoabdominal ganglion1168 714 of 4 2.60Up
Salivary gland976 384 of 4 2.18Up
Crop463 164 of 4 1.00None
Midgut462 174 of 4 1.00None
Tubule532 204 of 4 1.20Up
Hindgut539 134 of 4 1.20Up
Heart810 304 of 4 1.80Up
Fat body425 354 of 4 0.95None
Ovary604 164 of 4 1.30Up
Testis160 94 of 4 0.40Down
Male accessory glands1090 204 of 4 2.40Up
Virgin spermatheca683 374 of 4 1.52Up
Mated spermatheca820 444 of 4 1.83Up
Adult carcass436 164 of 4 1.00None
Larval CNS867 394 of 4 1.93Up
Larval Salivary gland1298 1174 of 4 2.89Up
Larval midgut729 94 of 4 1.63Up
Larval tubule953 174 of 4 2.10Up
Larval hindgut953 314 of 4 2.12Up
Larval fat body631 614 of 4 1.40None
Larval trachea650 554 of 4 1.45Up
Larval carcass581 164 of 4 1.30Up
S2 cells (growing)972 154 of 4 2.17Up
Whole fly448 174 of 4

Looking for FBgn0010380. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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