FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0010382 through 18771 annotations produced 1 hits

chr2L:15727569-15748155 (-) // 100.0 // (CyclinE):

Annotation Number : CG3938
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1626249_s_at
Accessions : protein= , nucleotide= NP_476959; /// NP_476960; /// NP_723924; /// NP_723925; /// NP_723926;
Pathway : 0000082 // G1/S transition of mitotic cell cycle // inferred from mutant phenotype /// 0000082 // G1/S transition of mit
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 00199
FlyMine data for full length.
Homophila reports that CG3938 is a close match (3e-12) to human gene BCL1;CCND1;PRAD1 (NP_444284), a gene associated with Centrocytic lymphoma (2);Leukemia/lymphoma, chronic B-cell, 151400 (3);Multiple myeloma, 254500 (2);Parathyroid adenomatosis 1 (2);von Hippel-Lindau disease, modification of, 193300 (3);{Colorectal cancer, susceptibility to} (3).
BioGrid reports that CG3938 interacts with CG6575 CG4887 CG5078 CG5360 CG7386 CG8367 CG1028 CG6677 CG5942 CG5942 CG5940 CG9885 CG9885 CG9885 CG9885 CG7776 CG11420 CG3388 CG4264 CG17117 CG8491 CG7981 CG7981 CG32491 CG18740 CG18740 CG7467 CG8114 CG32443 CG9610 CG8246 CG6716 CG4336 CG4336 CG4336 CG4336 CG1030 CG9936 CG1395 CG8651 CG10498 CG10498 CG10498 CG10498 CG7771 CG4220 CG8887 CG11049 CG32134 CG4952 CG1772 CG1772 CG1772 CG1772 CG1772 CG1772 CG1772 CG1772 CG1772 CG1772 CG1772 CG1772 CG12084 CG17667 CG6701 CG7552 CG4654 CG4654 CG4654 CG4654 CG6376 CG6376 CG6376 CG6376 CG6376 CG6376 CG6376 CG6376 CG6376 CG6376 CG6376 CG6376 CG1071 CG12165 CG12399 CG1775 CG1429 CG11172 CG15862 CG8556 CG13345 CG7413 CG10800 CG10800 CG10800 CG10800 CG1064 CG5092 CG3048 CG6147 CG6147 CG2328 CG10580 CG6975 CG6975 CG9088 CG6716 CG7904 CG11518 CG1891 CG7734 CG18497 CG18497 CG18497 CG18497 CG14026 CG33261 CG15010 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	11 ± 1	4 of 4	0.10	Down
Head	7 ± 0	2 of 4	0.00	Down
Eye	5 ± 0	0 of 4	0.03	Down
Thoracicoabdominal ganglion	8 ± 1	2 of 4	0.10	Down
Salivary gland	13 ± 1	1 of 4	0.08	Down
Crop	9 ± 0	3 of 4	0.10	Down
Midgut	10 ± 1	4 of 4	0.10	Down
Tubule	11 ± 1	3 of 4	0.10	Down
Hindgut	7 ± 0	4 of 4	0.00	Down
Heart	6 ± 1	2 of 4	0.04	Down
Fat body	36 ± 12	4 of 4	0.21	Down
Ovary	794 ± 21	4 of 4	4.60	Up
Testis	8 ± 0	4 of 4	0.00	Down
Male accessory glands	24 ± 4	4 of 4	0.10	Down
Virgin spermatheca	13 ± 2	4 of 4	0.08	Down
Mated spermatheca	12 ± 2	4 of 4	0.08	Down
Adult carcass	7 ± 2	0 of 4	0.00	Down
Larval CNS	527 ± 89	4 of 4	3.08	Up
Larval Salivary gland	75 ± 9	4 of 4	0.44	Down
Larval midgut	17 ± 2	4 of 4	0.10	Down
Larval tubule	20 ± 2	4 of 4	0.10	Down
Larval hindgut	41 ± 2	4 of 4	0.24	Down
Larval fat body	24 ± 3	4 of 4	0.10	Down
Larval trachea	57 ± 9	4 of 4	0.33	Down
Larval carcass	110 ± 16	4 of 4	0.65	Down
S2 cells (growing)	102 ± 9	4 of 4	0.60	Down
Whole fly	171 ± 7	4 of 4

Looking for FBgn0010382. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720