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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010385 through 18771 annotations produced 1 hits



defensin (Def):

Annotation Number : CG1385
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010385
Gbrowse : chr2R:5941793-5942072 (-) // 100.0 //
Probeset : 1634271_at
Accessions : protein= NP_523672;, nucleotide= NM_078948;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred fr
FlyMine data for FBgn0010385.
TRiP has 1 RNAi stocks for FBgn0010385 available for purchase.
VDRC has 3 RNAi stocks for FBgn0010385 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.00None
Head485 834 of 4 1.50None
Eye28 44 of 4 0.09None
Thoracicoabdominal ganglion6 00 of 4 0.00None
Salivary gland105 384 of 4 0.32None
Crop10 00 of 4 0.00None
Midgut165 194 of 4 0.50None
Tubule4 10 of 4 0.00Down
Hindgut27 191 of 4 0.10None
Heart26 191 of 4 0.08None
Fat body22 271 of 4 0.07None
Ovary132 384 of 4 0.40None
Testis4 10 of 4 0.00None
Male accessory glands11 40 of 4 0.00None
Virgin spermatheca2360 3024 of 4 7.16Up
Mated spermatheca1654 3594 of 4 5.02Up
Adult carcass245 194 of 4 0.70None
Larval CNS3 10 of 4 0.01None
Larval Salivary gland45 273 of 4 0.14None
Larval midgut44 163 of 4 0.13None
Larval tubule3 00 of 4 0.00None
Larval hindgut53 134 of 4 0.16None
Larval fat body74 701 of 4 0.20None
Larval trachea2069 9304 of 4 6.27Up
Larval carcass23 91 of 4 0.07None
S2 cells (growing)6 10 of 4 0.02None
Whole fly329 1184 of 4

Looking for FBgn0010385. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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