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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010387 through 18771 annotations produced 1 hits



diazepam binding inhibitor (Dbi):

Annotation Number : CG8627
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010387
Gbrowse : chr3L:7124970-7126563 (+) // 99.04 //
Probeset : 1625572_s_at
Accessions : protein= NP_523952; /// NP_729218;, nucleotide= NM_079228; /// NM_168192;
Interpro : 0000062 // acyl-CoA binding // inferred from sequence or structural similarity /// 0000062 // acyl-CoA binding // non-tr
FlyMine data for FBgn0010387.
BDGP gene expression has embryonic in situ data for Dbi: 14 pix of staining in 4 body parts.
VDRC has 2 RNAi stocks for FBgn0010387 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain531 ± 104 of 4 0.20Down
Head1954 ± 864 of 4 0.80None
Eye470 ± 794 of 4 0.20Down
Thoracicoabdominal ganglion683 ± 224 of 4 0.30Down
Salivary gland178 ± 114 of 4 0.07Down
Crop5971 ± 4014 of 4 2.50Up
Midgut5606 ± 1694 of 4 2.30Up
Tubule124 ± 164 of 4 0.10Down
Hindgut4751 ± 1884 of 4 2.00Up
Heart5752 ± 3534 of 4 2.41Up
Fat body5244 ± 4464 of 4 2.20Up
Ovary10 ± 10 of 4 0.00Down
Testis309 ± 74 of 4 0.10Down
Male accessory glands1633 ± 1724 of 4 0.70Down
Virgin spermatheca2657 ± 2024 of 4 1.11None
Mated spermatheca1690 ± 324 of 4 0.71Down
Adult carcass5520 ± 874 of 4 2.30Up
Larval CNS715 ± 454 of 4 0.30Down
Larval Salivary gland41 ± 14 of 4 0.02Down
Larval midgut5379 ± 2144 of 4 2.25Up
Larval tubule68 ± 154 of 4 0.00Down
Larval hindgut600 ± 794 of 4 0.25Down
Larval fat body600 ± 754 of 4 0.30Down
Larval trachea578 ± 1144 of 4 0.24Down
Larval carcass379 ± 714 of 4 0.16Down
S2 cells (growing)4 ± 10 of 4 0.00Down
Whole fly2389 ± 2014 of 4

Looking for FBgn0010387. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime