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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010388 through 18771 annotations produced 1 hits



():

Annotation Number : CG10816
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr2R:10633460-10634219 (+) // 100.0 //
Probeset : 1631697_at
Accessions : protein= NP_523744;, nucleotide= NM_079020;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
Interpro : 0051636 // Gram-negative bacterial cell surface binding // inferred from direct assay /// 0051637 // Gram-positive bacte


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 13 of 4 0.70None
Head48 124 of 4 2.60None
Eye74 204 of 4 4.04None
Thoracicoabdominal ganglion9 33 of 4 0.50None
Salivary gland11 21 of 4 0.62None
Crop6 00 of 4 0.30None
Midgut5 10 of 4 0.30Down
Tubule10 41 of 4 0.60None
Hindgut13 62 of 4 0.70None
Heart5 21 of 4 0.30Down
Fat body33 273 of 4 1.80None
Ovary7 11 of 4 0.40None
Testis1 00 of 4 0.10Down
Male accessory glands6 10 of 4 0.40None
Virgin spermatheca40 124 of 4 2.21None
Mated spermatheca25 14 of 4 1.38None
Adult carcass39 53 of 4 2.10Up
Larval CNS4 22 of 4 0.23Down
Larval Salivary gland8 23 of 4 0.43None
Larval midgut2 10 of 4 0.11Down
Larval tubule3 10 of 4 0.20Down
Larval hindgut11 14 of 4 0.64None
Larval fat body38 33 of 4 2.10Up
Larval trachea16 123 of 4 0.89None
Larval carcass16 11 of 4 0.88None
S2 cells (growing)12 14 of 4 0.68None
Whole fly18 43 of 4

Looking for FBgn0010388. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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