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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010389 through 18771 annotations produced 1 hits



Heartless (htl):

Annotation Number : CG7223
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010389
Gbrowse : chr3R:13870935-13878706 (-) // 100.0 //
Probeset : 1640867_s_at
Accessions : protein= NP_524394; /// NP_732286; /// NP_732287;, nucleotide= NM_079670; /// NM_169784; /// NM_169785;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from e
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0010389.
BDGP gene expression has embryonic in situ data for htl: 64 pix of staining in 20 body parts.
Homophila reports that CG7223 is a close match (2e-11) to human gene CDK4;CMM3 (NP_000066), a gene associated with Melanoma, 609048 (3).
BioGrid reports that CG7223 interacts with CG8710 CG1634 CG1634 CG9375 CG9375 CG9375 CG9375 CG2762 CG10079 CG10079 CG10072 CG31317 CG31317 CG1921 CG8339 .
TRiP has 1 RNAi stocks for FBgn0010389 available for purchase.
VDRC has 3 RNAi stocks for FBgn0010389 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain161 94 of 4 4.50Up
Head100 104 of 4 2.80Up
Eye34 14 of 4 0.97None
Thoracicoabdominal ganglion263 124 of 4 7.30Up
Salivary gland85 54 of 4 2.39Up
Crop615 94 of 417.10Up
Midgut55 14 of 4 1.50Up
Tubule13 14 of 4 0.40Down
Hindgut153 104 of 4 4.30Up
Heart63 74 of 4 1.76Up
Fat body13 54 of 4 0.37Down
Ovary19 14 of 4 0.50Down
Testis24 24 of 4 0.70Down
Male accessory glands35 34 of 4 1.00None
Virgin spermatheca18 34 of 4 0.50Down
Mated spermatheca26 34 of 4 0.73None
Adult carcass50 44 of 4 1.40None
Larval CNS110 174 of 4 3.09Up
Larval Salivary gland8 12 of 4 0.23Down
Larval midgut34 34 of 4 0.95None
Larval tubule8 13 of 4 0.20Down
Larval hindgut89 44 of 4 2.49Up
Larval fat body16 14 of 4 0.40Down
Larval trachea9 24 of 4 0.27Down
Larval carcass88 34 of 4 2.47Up
S2 cells (growing)182 84 of 4 5.07Up
Whole fly35 34 of 4

Looking for FBgn0010389. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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