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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010395 through 18771 annotations produced 1 hits



beta[nu] integrin (betaInt-nu):

Annotation Number : CG1762
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010395
Gbrowse : chr2L:21052831-21058044 (+) // 100.0 //
Probeset : 1630699_at
Accessions : protein= NP_523608;, nucleotide= NM_078884;
Pathway : 0008305 // integrin complex // inferred from sequence or structural similarity /// 0008305 // integrin complex // non-tr
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004872 // receptor activity // non-traceable au
FlyMine data for FBgn0010395.
BDGP gene expression has embryonic in situ data for betaInt-nu: 10 pix of staining in 2 body parts.
Homophila reports that CG1762 is a close match (3e-13) to human gene TNX;TNXB;TNXB1;TNXB2;TNXBS (NP_061978), a gene associated with Ehlers-Danlos due to tenascin X deficiency, 606408 (3);Ehlers-Danlos syndrome, hypermobility type, 130020 (3).
TRiP has 1 RNAi stocks for FBgn0010395 available for purchase.
VDRC has 3 RNAi stocks for FBgn0010395 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 14 of 4 0.20Down
Head9 14 of 4 0.20Down
Eye4 12 of 4 0.09Down
Thoracicoabdominal ganglion19 34 of 4 0.40Down
Salivary gland38 44 of 4 0.73Down
Crop30 44 of 4 0.60Down
Midgut415 114 of 4 7.90Up
Tubule446 404 of 4 8.50Up
Hindgut182 54 of 4 3.50Up
Heart14 14 of 4 0.28Down
Fat body20 44 of 4 0.40Down
Ovary25 14 of 4 0.50Down
Testis5 12 of 4 0.10Down
Male accessory glands339 74 of 4 6.50Up
Virgin spermatheca25 24 of 4 0.49Down
Mated spermatheca23 14 of 4 0.45Down
Adult carcass11 23 of 4 0.20Down
Larval CNS14 14 of 4 0.27Down
Larval Salivary gland6 21 of 4 0.12Down
Larval midgut447 174 of 4 8.52Up
Larval tubule190 54 of 4 3.60Up
Larval hindgut195 34 of 4 3.72Up
Larval fat body10 23 of 4 0.20Down
Larval trachea10 24 of 4 0.21Down
Larval carcass27 44 of 4 0.53Down
S2 cells (growing)61 54 of 4 1.17None
Whole fly52 34 of 4

Looking for FBgn0010395. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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