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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010398 through 18771 annotations produced 1 hits



Leucine-rich repeat 47 (Lrr47):

Annotation Number : CG6098
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010398
Gbrowse : chr2L:10517336-10518991 (+) // 100.0 //
Probeset : 1623350_at
Accessions : protein= NP_523539;, nucleotide= NM_078815;
Pathway : 0000300 // peripheral to membrane of membrane fraction // inferred from direct assay /// 0005576 // extracellular region
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0010398.
BDGP gene expression has embryonic in situ data for Lrr47: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0010398 available for purchase.
VDRC has 3 RNAi stocks for FBgn0010398 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 14 of 4 0.60Down
Head16 13 of 4 0.30Down
Eye20 14 of 4 0.36Down
Thoracicoabdominal ganglion37 14 of 4 0.70Down
Salivary gland8 30 of 4 0.15Down
Crop21 14 of 4 0.40Down
Midgut21 14 of 4 0.40Down
Tubule24 04 of 4 0.40Down
Hindgut18 24 of 4 0.30Down
Heart11 04 of 4 0.20Down
Fat body7 70 of 4 0.14Down
Ovary134 44 of 4 2.40Up
Testis81 54 of 4 1.50Up
Male accessory glands7 10 of 4 0.10Down
Virgin spermatheca27 32 of 4 0.49Down
Mated spermatheca22 04 of 4 0.40Down
Adult carcass21 30 of 4 0.40Down
Larval CNS56 14 of 4 1.01None
Larval Salivary gland37 14 of 4 0.68Down
Larval midgut29 31 of 4 0.53Down
Larval tubule32 24 of 4 0.60Down
Larval hindgut20 33 of 4 0.36Down
Larval fat body40 34 of 4 0.70Down
Larval trachea37 54 of 4 0.66Down
Larval carcass20 24 of 4 0.36Down
S2 cells (growing)33 14 of 4 0.60Down
Whole fly56 14 of 4

Looking for FBgn0010398. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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