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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010401 through 18771 annotations produced 1 hits



Os-C (Os-C):

Annotation Number : CG3250
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010401
Gbrowse : chr3R:3804708-3805546 (+) // 100.0 //
Probeset : 1636865_at
Accessions : protein= NP_001163543; /// NP_649753;, nucleotide= NM_001170072; /// NM_141496;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005550 // pheromone binding // non-traceable autho
FlyMine data for FBgn0010401.
VDRC has 3 RNAi stocks for FBgn0010401 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head2578 ± 894 of 412.30Up
Eye590 ± 2994 of 4 2.81None
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland6 ± 20 of 4 0.03Down
Crop7 ± 10 of 4 0.00Down
Midgut8 ± 00 of 4 0.00Down
Tubule4 ± 00 of 4 0.00Down
Hindgut5 ± 20 of 4 0.00Down
Heart5 ± 00 of 4 0.02Down
Fat body10 ± 41 of 4 0.05Down
Ovary7 ± 03 of 4 0.00Down
Testis6 ± 00 of 4 0.00Down
Male accessory glands8 ± 30 of 4 0.00Down
Virgin spermatheca5 ± 20 of 4 0.03Down
Mated spermatheca4 ± 10 of 4 0.02Down
Adult carcass12 ± 41 of 4 0.10Down
Larval CNS4 ± 10 of 4 0.02Down
Larval Salivary gland2 ± 00 of 4 0.01Down
Larval midgut4 ± 10 of 4 0.02Down
Larval tubule5 ± 10 of 4 0.00Down
Larval hindgut7 ± 00 of 4 0.03Down
Larval fat body11 ± 10 of 4 0.10Down
Larval trachea10 ± 141 of 4 0.05Down
Larval carcass7 ± 00 of 4 0.03Down
S2 cells (growing)7 ± 10 of 4 0.04Down
Whole fly209 ± 134 of 4

Looking for FBgn0010401. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime