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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0010409 through 18771 annotations produced 1 hits



ribosomal protein L18a (RpL18A):

Annotation Number : CG6510
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010409
Gbrowse : chr2R:13433894-13434999 (-) // 100.0 //
Probeset : 1636056_at
Accessions : protein= NP_523774;, nucleotide= NM_079050;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // non-traceable author statemen
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0010409.
BDGP gene expression has embryonic in situ data for RpL18A: 4 pix of staining in 1 body parts.
BioGrid reports that CG6510 interacts with CG6998 CG8291 CG8414 CG9373 .
VDRC has 1 RNAi stocks for FBgn0010409 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3080 514 of 4 0.70Down
Head4952 1534 of 4 1.10None
Eye6548 1684 of 4 1.47Up
Thoracicoabdominal ganglion4502 1204 of 4 1.00None
Salivary gland13984 5244 of 4 3.14Up
Crop6624 3924 of 4 1.50Up
Midgut5497 1584 of 4 1.20Up
Tubule5135 1104 of 4 1.20Up
Hindgut5388 1114 of 4 1.20Up
Heart7147 4564 of 4 1.61Up
Fat body5905 8454 of 4 1.33Up
Ovary3705 594 of 4 0.80None
Testis1215 274 of 4 0.30Down
Male accessory glands10030 3044 of 4 2.30Up
Virgin spermatheca5256 2784 of 4 1.18None
Mated spermatheca5329 2164 of 4 1.20None
Adult carcass6389 3104 of 4 1.40Up
Larval CNS2903 1884 of 4 0.65Down
Larval Salivary gland8331 4204 of 4 1.87Up
Larval midgut5095 1254 of 4 1.15None
Larval tubule5540 1064 of 4 1.20Up
Larval hindgut4691 634 of 4 1.05None
Larval fat body8634 9434 of 4 1.90Up
Larval trachea6487 1874 of 4 1.46Up
Larval carcass5041 3664 of 4 1.13None
S2 cells (growing)4669 864 of 4 1.05None
Whole fly4448 3054 of 4

Looking for FBgn0010409. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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